miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31298 3' -44.9 NC_006623.1 + 123067 0.7 0.999643
Target:  5'- cGGAGugGguGAGGGGGGAgaGUGGAc--GGa -3'
miRNA:   3'- -CCUCugU--CUUUCUCCU--UACCUuaaCC- -5'
31298 3' -44.9 NC_006623.1 + 123844 0.71 0.998404
Target:  5'- cGGAGuuAGuuGGGGGGccgaacggGGAGUUGGa -3'
miRNA:   3'- -CCUCugUCuuUCUCCUua------CCUUAACC- -5'
31298 3' -44.9 NC_006623.1 + 124619 0.76 0.964521
Target:  5'- cGGAGGUAaaaauuuuGAGAGAGGAGUGGAAauauuuUUGGu -3'
miRNA:   3'- -CCUCUGU--------CUUUCUCCUUACCUU------AACC- -5'
31298 3' -44.9 NC_006623.1 + 137767 0.71 0.998404
Target:  5'- cGGAGuuAGuuGGGGGGccgaacggGGAGUUGGa -3'
miRNA:   3'- -CCUCugUCuuUCUCCUua------CCUUAACC- -5'
31298 3' -44.9 NC_006623.1 + 138545 0.7 0.999643
Target:  5'- cGGAGugGguGAGGGGGGAgaGUGGAc--GGa -3'
miRNA:   3'- -CCUCugU--CUUUCUCCU--UACCUuaaCC- -5'
31298 3' -44.9 NC_006623.1 + 139245 0.68 0.999944
Target:  5'- gGGAGAauUAG-AGGAGGcAAUGGAAg-GGa -3'
miRNA:   3'- -CCUCU--GUCuUUCUCC-UUACCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 139699 0.71 0.998687
Target:  5'- gGGGGugGGAGGGAGGg--GGAGg--- -3'
miRNA:   3'- -CCUCugUCUUUCUCCuuaCCUUaacc -5'
31298 3' -44.9 NC_006623.1 + 140240 0.71 0.99796
Target:  5'- cGGAGuCGGAggaaGAGcagccugggugccgGGGAGUGGAcUUGGg -3'
miRNA:   3'- -CCUCuGUCU----UUC--------------UCCUUACCUuAACC- -5'
31298 3' -44.9 NC_006623.1 + 143591 0.68 0.999944
Target:  5'- cGAGAaugAGGAAGAGGA--GGAAgaGGa -3'
miRNA:   3'- cCUCUg--UCUUUCUCCUuaCCUUaaCC- -5'
31298 3' -44.9 NC_006623.1 + 146888 0.69 0.9999
Target:  5'- aGGAcGCugcgAGAGGGAGGGcgGGAAUUa- -3'
miRNA:   3'- -CCUcUG----UCUUUCUCCUuaCCUUAAcc -5'
31298 3' -44.9 NC_006623.1 + 147088 0.66 0.999996
Target:  5'- uGGGGACcGAuugcGGGGAGUGuGAuaaUGGg -3'
miRNA:   3'- -CCUCUGuCUuu--CUCCUUAC-CUua-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.