miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31302 5' -58.1 NC_006623.1 + 138498 0.68 0.743247
Target:  5'- cGUGucGCUC-GUUUCUGGgGGGGGgGGg -3'
miRNA:   3'- uCAU--UGAGcCAGAGGCCgCCCUCgCC- -5'
31302 5' -58.1 NC_006623.1 + 124813 0.67 0.780285
Target:  5'- cGUGAUUCGGU--UCGGUgagGGGGGCGa -3'
miRNA:   3'- uCAUUGAGCCAgaGGCCG---CCCUCGCc -5'
31302 5' -58.1 NC_006623.1 + 123114 0.68 0.743247
Target:  5'- cGUGucGCUC-GUUUCUGGgGGGGGgGGg -3'
miRNA:   3'- uCAU--UGAGcCAGAGGCCgCCCUCgCC- -5'
31302 5' -58.1 NC_006623.1 + 1768 1.11 0.00163
Target:  5'- cAGUAACUCGGUCUCCGGCGGGAGCGGg -3'
miRNA:   3'- -UCAUUGAGCCAGAGGCCGCCCUCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.