miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31307 5' -54.5 NC_006623.1 + 2505 0.69 0.808576
Target:  5'- gCACUGAuCUGuCCAGGUgCACUGAa -3'
miRNA:   3'- aGUGACUcGGCuGGUCUAgGUGACUc -5'
31307 5' -54.5 NC_006623.1 + 130517 0.66 0.94533
Target:  5'- -gACUGAGCCG-CCGGGg--ACUGAa -3'
miRNA:   3'- agUGACUCGGCuGGUCUaggUGACUc -5'
31307 5' -54.5 NC_006623.1 + 45909 0.66 0.949692
Target:  5'- -uGCUGcuccuacaauGCCGGCCAauUCUGCUGAGa -3'
miRNA:   3'- agUGACu---------CGGCUGGUcuAGGUGACUC- -5'
31307 5' -54.5 NC_006623.1 + 45702 0.66 0.930789
Target:  5'- gUACUgGAGCCGuACCAGAaugCCGgUGGu -3'
miRNA:   3'- aGUGA-CUCGGC-UGGUCUa--GGUgACUc -5'
31307 5' -54.5 NC_006623.1 + 2646 1.09 0.003833
Target:  5'- uUCACUGAGCCGACCAGAUCCACUGAGu -3'
miRNA:   3'- -AGUGACUCGGCUGGUCUAGGUGACUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.