miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3131 3' -58.7 NC_001493.1 + 1 0.7 0.591477
Target:  5'- cCCCACGCCC-CCuuGGggUCUCgCCa- -3'
miRNA:   3'- -GGGUGUGGGcGGu-CCaaAGAGgGGcu -5'
3131 3' -58.7 NC_001493.1 + 91 0.68 0.691429
Target:  5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 128 0.67 0.759025
Target:  5'- aCCACACCCacuuCCGGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 165 0.68 0.691429
Target:  5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 202 0.68 0.691429
Target:  5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 239 0.68 0.691429
Target:  5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 2936 0.71 0.519843
Target:  5'- gCCguUACCaGCCAGGUcggcgggggugaggUUCUUCCCGAg -3'
miRNA:   3'- -GGguGUGGgCGGUCCA--------------AAGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 4563 0.69 0.637536
Target:  5'- gCCGCGCCC-CCGGGUgugcccaaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGcGGUCCAaagag----GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 4570 0.67 0.753396
Target:  5'- cCCCGaaagugUACCagGCCGGGUacgacgucuggacggUUCUCaCCCGAg -3'
miRNA:   3'- -GGGU------GUGGg-CGGUCCA---------------AAGAG-GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 5397 0.66 0.798999
Target:  5'- cUCCGCucagacucagagacgACCCGCCAuucg-UUCCCCGAg -3'
miRNA:   3'- -GGGUG---------------UGGGCGGUccaaaGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 7866 0.7 0.591477
Target:  5'- cCCCu--CCCGCCcGGUgg--CCCCGAa -3'
miRNA:   3'- -GGGuguGGGCGGuCCAaagaGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 8446 0.68 0.691429
Target:  5'- uCCUgugGCGCCgCGCCGGGg--CUCCCa-- -3'
miRNA:   3'- -GGG---UGUGG-GCGGUCCaaaGAGGGgcu -5'
3131 3' -58.7 NC_001493.1 + 8794 1.1 0.00136
Target:  5'- uCCCACACCCGCCAGGUUUCUCCCCGAa -3'
miRNA:   3'- -GGGUGUGGGCGGUCCAAAGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 9419 0.75 0.291591
Target:  5'- cCCCACGCCCGCCuccccGGUccugUCCCGAc -3'
miRNA:   3'- -GGGUGUGGGCGGu----CCAaagaGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 13475 0.68 0.701297
Target:  5'- aCCgCACGCCCGCag-----UUCCCCGAg -3'
miRNA:   3'- -GG-GUGUGGGCGguccaaaGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 15067 0.67 0.730529
Target:  5'- gCCCGCACCCGCaccg---CUCCCUc- -3'
miRNA:   3'- -GGGUGUGGGCGguccaaaGAGGGGcu -5'
3131 3' -58.7 NC_001493.1 + 17422 0.68 0.671561
Target:  5'- gUCCACGCgCGCCAGGgugCgggcaCCCCc- -3'
miRNA:   3'- -GGGUGUGgGCGGUCCaaaGa----GGGGcu -5'
3131 3' -58.7 NC_001493.1 + 18303 0.7 0.558766
Target:  5'- gCCACACUCGgggcaauauauuuuUCGGG-UUCUCCCCGc -3'
miRNA:   3'- gGGUGUGGGC--------------GGUCCaAAGAGGGGCu -5'
3131 3' -58.7 NC_001493.1 + 18352 0.68 0.69044
Target:  5'- uCCCACACCCGCguGGccaccgugaggggCCCGAu -3'
miRNA:   3'- -GGGUGUGGGCGguCCaaagag-------GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 19462 0.67 0.754337
Target:  5'- cCCCGCACUacacucggagagcguCGCCAGucugacaaaauaCUCCCCGAc -3'
miRNA:   3'- -GGGUGUGG---------------GCGGUCcaaa--------GAGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.