miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3131 3' -58.7 NC_001493.1 + 202 0.68 0.691429
Target:  5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 120117 0.69 0.637536
Target:  5'- gCCGCGCCC-CCGGGUgugcccaaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGcGGUCCAaagag----GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 115757 0.68 0.651569
Target:  5'- aCCACACCCacuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc--GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 17422 0.68 0.671561
Target:  5'- gUCCACGCgCGCCAGGgugCgggcaCCCCc- -3'
miRNA:   3'- -GGGUGUGgGCGGUCCaaaGa----GGGGcu -5'
3131 3' -58.7 NC_001493.1 + 132976 0.68 0.671561
Target:  5'- gUCCACGCgCGCCAGGgugCgggcaCCCCc- -3'
miRNA:   3'- -GGGUGUGgGCGGUCCaaaGa----GGGGcu -5'
3131 3' -58.7 NC_001493.1 + 18352 0.68 0.69044
Target:  5'- uCCCACACCCGCguGGccaccgugaggggCCCGAu -3'
miRNA:   3'- -GGGUGUGGGCGguCCaaagag-------GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 133906 0.68 0.69044
Target:  5'- uCCCACACCCGCguGGccaccgugaggggCCCGAu -3'
miRNA:   3'- -GGGUGUGGGCGguCCaaagag-------GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 91 0.68 0.691429
Target:  5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 165 0.68 0.691429
Target:  5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 4563 0.69 0.637536
Target:  5'- gCCGCGCCC-CCGGGUgugcccaaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGcGGUCCAaagag----GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 123420 0.7 0.591477
Target:  5'- cCCCu--CCCGCCcGGUgg--CCCCGAa -3'
miRNA:   3'- -GGGuguGGGCGGuCCAaagaGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 115556 0.7 0.591477
Target:  5'- cCCCACGCCC-CCuuGGggUCUCgCCa- -3'
miRNA:   3'- -GGGUGUGGGcGGu-CCaaAGAGgGGcu -5'
3131 3' -58.7 NC_001493.1 + 124348 1.1 0.00136
Target:  5'- uCCCACACCCGCCAGGUUUCUCCCCGAa -3'
miRNA:   3'- -GGGUGUGGGCGGUCCAAAGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 84562 0.74 0.370465
Target:  5'- aCCCAgACCCGCCugcccaugUCaUCCCCGAg -3'
miRNA:   3'- -GGGUgUGGGCGGuccaa---AG-AGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 2936 0.71 0.519843
Target:  5'- gCCguUACCaGCCAGGUcggcgggggugaggUUCUUCCCGAg -3'
miRNA:   3'- -GGguGUGGgCGGUCCA--------------AAGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 118490 0.71 0.519843
Target:  5'- gCCguUACCaGCCAGGUcggcgggggugaggUUCUUCCCGAg -3'
miRNA:   3'- -GGguGUGGgCGGUCCA--------------AAGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 43538 0.71 0.532386
Target:  5'- cCCCAacguGCaCCGCCAGuGUUUCaaagUCCCUGGa -3'
miRNA:   3'- -GGGUg---UG-GGCGGUC-CAAAG----AGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 70508 0.7 0.5716
Target:  5'- uCCCACucagugugAUCCGCCGGGa---UCCCCGc -3'
miRNA:   3'- -GGGUG--------UGGGCGGUCCaaagAGGGGCu -5'
3131 3' -58.7 NC_001493.1 + 1 0.7 0.591477
Target:  5'- cCCCACGCCC-CCuuGGggUCUCgCCa- -3'
miRNA:   3'- -GGGUGUGGGcGGu-CCaaAGAGgGGcu -5'
3131 3' -58.7 NC_001493.1 + 7866 0.7 0.591477
Target:  5'- cCCCu--CCCGCCcGGUgg--CCCCGAa -3'
miRNA:   3'- -GGGuguGGGCGGuCCAaagaGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.