miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31310 5' -52.2 NC_006623.1 + 4498 1.08 0.006876
Target:  5'- gGACCGACUGGACAGACCCAAAUUCCUg -3'
miRNA:   3'- -CUGGCUGACCUGUCUGGGUUUAAGGA- -5'
31310 5' -52.2 NC_006623.1 + 128602 0.72 0.789898
Target:  5'- cGCCGguACUGGACGGGCUCGAGUcgagCCc -3'
miRNA:   3'- cUGGC--UGACCUGUCUGGGUUUAa---GGa -5'
31310 5' -52.2 NC_006623.1 + 38405 0.71 0.851485
Target:  5'- aGACCGGCUcuuuacgaAGACCCAAAUUUCUg -3'
miRNA:   3'- -CUGGCUGAccug----UCUGGGUUUAAGGA- -5'
31310 5' -52.2 NC_006623.1 + 21002 0.69 0.926796
Target:  5'- uGACCaGCgcGGGgGGACCUGGAUUCCg -3'
miRNA:   3'- -CUGGcUGa-CCUgUCUGGGUUUAAGGa -5'
31310 5' -52.2 NC_006623.1 + 64642 0.69 0.92118
Target:  5'- -uCUGAUUGGGgAGACCCAuAUUCg- -3'
miRNA:   3'- cuGGCUGACCUgUCUGGGUuUAAGga -5'
31310 5' -52.2 NC_006623.1 + 122102 0.68 0.942124
Target:  5'- cGGCCGACUcGG-UAGACCCGugcAUUCg- -3'
miRNA:   3'- -CUGGCUGA-CCuGUCUGGGUu--UAAGga -5'
31310 5' -52.2 NC_006623.1 + 1844 0.68 0.951086
Target:  5'- -cUCGACUGGGCAGagacuagauGCCCGAAaaUCCc -3'
miRNA:   3'- cuGGCUGACCUGUC---------UGGGUUUa-AGGa -5'
31310 5' -52.2 NC_006623.1 + 139510 0.68 0.942124
Target:  5'- cGGCCGACUcGG-UAGACCCGugcAUUCg- -3'
miRNA:   3'- -CUGGCUGA-CCuGUCUGGGUu--UAAGga -5'
31310 5' -52.2 NC_006623.1 + 28580 0.66 0.982049
Target:  5'- cACCGACUGGAaauaucuGGgCCGAuUUCCc -3'
miRNA:   3'- cUGGCUGACCUgu-----CUgGGUUuAAGGa -5'
31310 5' -52.2 NC_006623.1 + 1236 0.66 0.974995
Target:  5'- aGACCGGcCUGGcACGGACCC-----CCa -3'
miRNA:   3'- -CUGGCU-GACC-UGUCUGGGuuuaaGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.