miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31315 3' -60.7 NC_006623.1 + 143510 0.66 0.695089
Target:  5'- aGCCC------CGaCCGGGACUCUGCCCa -3'
miRNA:   3'- -UGGGcauaccGC-GGCCUUGGGACGGG- -5'
31315 3' -60.7 NC_006623.1 + 118102 0.66 0.695089
Target:  5'- aGCCC------CGaCCGGGACUCUGCCCa -3'
miRNA:   3'- -UGGGcauaccGC-GGCCUUGGGACGGG- -5'
31315 3' -60.7 NC_006623.1 + 145022 0.66 0.685319
Target:  5'- -aCCGUAcGG-GCCcGAACCCgaccGCCCu -3'
miRNA:   3'- ugGGCAUaCCgCGGcCUUGGGa---CGGG- -5'
31315 3' -60.7 NC_006623.1 + 116590 0.66 0.685319
Target:  5'- -aCCGUAcGG-GCCcGAACCCgaccGCCCu -3'
miRNA:   3'- ugGGCAUaCCgCGGcCUUGGGa---CGGG- -5'
31315 3' -60.7 NC_006623.1 + 137356 0.67 0.655792
Target:  5'- -gCCGagcgAUGGCGCCucGACCgUGCCUu -3'
miRNA:   3'- ugGGCa---UACCGCGGccUUGGgACGGG- -5'
31315 3' -60.7 NC_006623.1 + 475 0.68 0.616209
Target:  5'- uGCCgCGcuuuuaAUGGCGCUcgcgcuGGGugCUUGCCCg -3'
miRNA:   3'- -UGG-GCa-----UACCGCGG------CCUugGGACGGG- -5'
31315 3' -60.7 NC_006623.1 + 9008 0.68 0.567026
Target:  5'- uACCCGUGcuccucGGUGUuguccuuccaCGGAAgUCUGCCCa -3'
miRNA:   3'- -UGGGCAUa-----CCGCG----------GCCUUgGGACGGG- -5'
31315 3' -60.7 NC_006623.1 + 126347 0.71 0.428236
Target:  5'- uUCCGUAUGaGCGaCGGGACCguaUGUCCg -3'
miRNA:   3'- uGGGCAUAC-CGCgGCCUUGGg--ACGGG- -5'
31315 3' -60.7 NC_006623.1 + 146379 0.71 0.411238
Target:  5'- aGCCCcauGUG-GGCGCCGGGGCgaUGCCg -3'
miRNA:   3'- -UGGG---CAUaCCGCGGCCUUGggACGGg -5'
31315 3' -60.7 NC_006623.1 + 115233 0.71 0.411238
Target:  5'- aGCCCcauGUG-GGCGCCGGGGCgaUGCCg -3'
miRNA:   3'- -UGGG---CAUaCCGCGGCCUUGggACGGg -5'
31315 3' -60.7 NC_006623.1 + 25291 1.1 0.000875
Target:  5'- gACCCGUAUGGCGCCGGAACCCUGCCCu -3'
miRNA:   3'- -UGGGCAUACCGCGGCCUUGGGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.