miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31317 5' -53.6 NC_006623.1 + 25712 0.66 0.967723
Target:  5'- uAGAAGcgGUGGCGGgGGCGCgcaaauCCa- -3'
miRNA:   3'- -UCUUUaaCGUCGCCgCCGUGau----GGcc -5'
31317 5' -53.6 NC_006623.1 + 80857 0.66 0.967723
Target:  5'- uGAGAUUGCuccuGCGGuCGGaGCc-CCGGa -3'
miRNA:   3'- uCUUUAACGu---CGCC-GCCgUGauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 145455 0.66 0.960997
Target:  5'- cGGGGAUUGUGGUucuuGCGGUuCUugCGGu -3'
miRNA:   3'- -UCUUUAACGUCGc---CGCCGuGAugGCC- -5'
31317 5' -53.6 NC_006623.1 + 116157 0.66 0.960997
Target:  5'- cGGGGAUUGUGGUucuuGCGGUuCUugCGGu -3'
miRNA:   3'- -UCUUUAACGUCGc---CGCCGuGAugGCC- -5'
31317 5' -53.6 NC_006623.1 + 105793 0.66 0.960997
Target:  5'- uAGAGuUUGCGGCaa-GGCA-UGCCGGa -3'
miRNA:   3'- -UCUUuAACGUCGccgCCGUgAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 132439 0.66 0.957295
Target:  5'- -uGGAUUGCGGUGGaaaaCGGUGCUGCUcaGGc -3'
miRNA:   3'- ucUUUAACGUCGCC----GCCGUGAUGG--CC- -5'
31317 5' -53.6 NC_006623.1 + 111834 0.66 0.949187
Target:  5'- uGAAAUgGCAGCGGCccGGCGggGCaUGGc -3'
miRNA:   3'- uCUUUAaCGUCGCCG--CCGUgaUG-GCC- -5'
31317 5' -53.6 NC_006623.1 + 66553 0.66 0.949187
Target:  5'- uGAGuuUUGUAGCuGCGGCcggcgcggcucACUACCGa -3'
miRNA:   3'- uCUUu-AACGUCGcCGCCG-----------UGAUGGCc -5'
31317 5' -53.6 NC_006623.1 + 117283 0.67 0.944774
Target:  5'- uGGAAGccGCAGCGaaagagccaccuGCGGCAaccCCGGa -3'
miRNA:   3'- -UCUUUaaCGUCGC------------CGCCGUgauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 113576 0.67 0.944774
Target:  5'- uGGGGcaUGCGcGCGGCcggccuccagGGCAUUGCCGu -3'
miRNA:   3'- -UCUUuaACGU-CGCCG----------CCGUGAUGGCc -5'
31317 5' -53.6 NC_006623.1 + 144329 0.67 0.944774
Target:  5'- uGGAAGccGCAGCGaaagagccaccuGCGGCAaccCCGGa -3'
miRNA:   3'- -UCUUUaaCGUCGC------------CGCCGUgauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 148036 0.67 0.944774
Target:  5'- uGGGGcaUGCGcGCGGCcggccuccagGGCAUUGCCGu -3'
miRNA:   3'- -UCUUuaACGU-CGCCG----------CCGUGAUGGCc -5'
31317 5' -53.6 NC_006623.1 + 144830 0.67 0.940116
Target:  5'- aAGAcgagGCGGcCGGCGGaCGacUUGCCGGu -3'
miRNA:   3'- -UCUuuaaCGUC-GCCGCC-GU--GAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 121531 0.67 0.930063
Target:  5'- cGuuAUUGCGGUGcGCGGCAC--CCGc -3'
miRNA:   3'- uCuuUAACGUCGC-CGCCGUGauGGCc -5'
31317 5' -53.6 NC_006623.1 + 140081 0.67 0.930063
Target:  5'- cGuuAUUGCGGUGcGCGGCAC--CCGc -3'
miRNA:   3'- uCuuUAACGUCGC-CGCCGUGauGGCc -5'
31317 5' -53.6 NC_006623.1 + 132775 0.69 0.887106
Target:  5'- -----gUGaCGGCGGCGGUGCU-CUGGc -3'
miRNA:   3'- ucuuuaAC-GUCGCCGCCGUGAuGGCC- -5'
31317 5' -53.6 NC_006623.1 + 122039 0.69 0.880008
Target:  5'- aAGggGggGgGGCGGCGGgAUguCCGGc -3'
miRNA:   3'- -UCuuUaaCgUCGCCGCCgUGauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 139573 0.69 0.880008
Target:  5'- aAGggGggGgGGCGGCGGgAUguCCGGc -3'
miRNA:   3'- -UCuuUaaCgUCGCCGCCgUGauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 25196 0.69 0.880008
Target:  5'- -uAGGUUGUGG-GGCGGCACauCCGGc -3'
miRNA:   3'- ucUUUAACGUCgCCGCCGUGauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 137735 0.7 0.844496
Target:  5'- ------cGCAGCGGCGGUaggacuguggaccgcGCUGUCGGa -3'
miRNA:   3'- ucuuuaaCGUCGCCGCCG---------------UGAUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.