miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31321 3' -46.1 NC_006623.1 + 97030 0.66 0.999982
Target:  5'- --aAGCCA--AAAGAcaUUUCCUGGUa -3'
miRNA:   3'- ggcUCGGUuaUUUCUuaAAGGGACCG- -5'
31321 3' -46.1 NC_006623.1 + 68530 0.66 0.999975
Target:  5'- -aGAGCCuu--AAGAAa-UCCCaGGCa -3'
miRNA:   3'- ggCUCGGuuauUUCUUaaAGGGaCCG- -5'
31321 3' -46.1 NC_006623.1 + 90368 0.66 0.999953
Target:  5'- -gGAGUCGGUGGAG----UUCUUGGCg -3'
miRNA:   3'- ggCUCGGUUAUUUCuuaaAGGGACCG- -5'
31321 3' -46.1 NC_006623.1 + 83475 0.66 0.999953
Target:  5'- -aGAGCUGAagauAAGAGUcggUgCCUGGCu -3'
miRNA:   3'- ggCUCGGUUau--UUCUUAa--AgGGACCG- -5'
31321 3' -46.1 NC_006623.1 + 139070 0.66 0.999952
Target:  5'- gCCGAGCg---AGAGAccucccgGUcUCuCCUGGCg -3'
miRNA:   3'- -GGCUCGguuaUUUCU-------UAaAG-GGACCG- -5'
31321 3' -46.1 NC_006623.1 + 122542 0.66 0.999952
Target:  5'- gCCGAGCg---AGAGAccucccgGUcUCuCCUGGCg -3'
miRNA:   3'- -GGCUCGguuaUUUCU-------UAaAG-GGACCG- -5'
31321 3' -46.1 NC_006623.1 + 138494 0.67 0.999937
Target:  5'- -aGAGaaaGAUAGAGcgcgcgCCCUGGCg -3'
miRNA:   3'- ggCUCgg-UUAUUUCuuaaa-GGGACCG- -5'
31321 3' -46.1 NC_006623.1 + 123118 0.67 0.999937
Target:  5'- -aGAGaaaGAUAGAGcgcgcgCCCUGGCg -3'
miRNA:   3'- ggCUCgg-UUAUUUCuuaaa-GGGACCG- -5'
31321 3' -46.1 NC_006623.1 + 33588 0.67 0.999917
Target:  5'- cCCGcGCCGAUGggacacgcgaGAGAAauauuUUUCCucauuCUGGCg -3'
miRNA:   3'- -GGCuCGGUUAU----------UUCUU-----AAAGG-----GACCG- -5'
31321 3' -46.1 NC_006623.1 + 29866 0.67 0.999917
Target:  5'- aCCGAGUgGGUuuuAAGGggUgUCCCagagGGUu -3'
miRNA:   3'- -GGCUCGgUUA---UUUCuuAaAGGGa---CCG- -5'
31321 3' -46.1 NC_006623.1 + 17561 0.67 0.999917
Target:  5'- gCCGcGGCCGAUuuugccAGAaugcggcuaAUUUgCCUGGCu -3'
miRNA:   3'- -GGC-UCGGUUAuu----UCU---------UAAAgGGACCG- -5'
31321 3' -46.1 NC_006623.1 + 87929 0.67 0.999857
Target:  5'- uCCGAGCCGAgu-AGuAUUgcUCUCUGuGUg -3'
miRNA:   3'- -GGCUCGGUUauuUCuUAA--AGGGAC-CG- -5'
31321 3' -46.1 NC_006623.1 + 27032 0.67 0.999815
Target:  5'- aCCG-GCCAGaAAAGAucaugUCCC-GGUa -3'
miRNA:   3'- -GGCuCGGUUaUUUCUuaa--AGGGaCCG- -5'
31321 3' -46.1 NC_006623.1 + 127820 0.68 0.999762
Target:  5'- aCCGAaacGCUGAaAgcGAGgcgCCCUGGCa -3'
miRNA:   3'- -GGCU---CGGUUaUuuCUUaaaGGGACCG- -5'
31321 3' -46.1 NC_006623.1 + 118695 0.68 0.999762
Target:  5'- gCGGGCCAGUuGAGAA--UCCCg--- -3'
miRNA:   3'- gGCUCGGUUAuUUCUUaaAGGGaccg -5'
31321 3' -46.1 NC_006623.1 + 142917 0.68 0.999762
Target:  5'- gCGGGCCAGUuGAGAA--UCCCg--- -3'
miRNA:   3'- gGCUCGGUUAuUUCUUaaAGGGaccg -5'
31321 3' -46.1 NC_006623.1 + 61409 0.68 0.999696
Target:  5'- -gGGGCCGGUAaccacuuaaGAGGAUcUUCCaaGGCa -3'
miRNA:   3'- ggCUCGGUUAU---------UUCUUA-AAGGgaCCG- -5'
31321 3' -46.1 NC_006623.1 + 130771 0.68 0.999514
Target:  5'- cCCGGaCgGAUAGAGucg-UCCCUGGg -3'
miRNA:   3'- -GGCUcGgUUAUUUCuuaaAGGGACCg -5'
31321 3' -46.1 NC_006623.1 + 46154 0.68 0.999393
Target:  5'- uCUGAGCCAgcucgGUAAAGGucuugUCCgaGGUu -3'
miRNA:   3'- -GGCUCGGU-----UAUUUCUuaa--AGGgaCCG- -5'
31321 3' -46.1 NC_006623.1 + 74117 0.68 0.999393
Target:  5'- gUGAGCCgAGUAuuGAAUaUCCagaaaaCUGGCa -3'
miRNA:   3'- gGCUCGG-UUAUuuCUUAaAGG------GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.