miRNA: 3'- -GGCU---CGGuuaUUUCUUAAAGGGACcg -5'
miRNA: 3'- -GGCUCGGUUauuUCUUAAA--------GGGA---CCG- -5'
miRNA: 3'- -GGCUCGGUUAuuucUUAAAGGGACCg -5'
miRNA: 3'- -GGCUCGGuuauUUCUUaaaGGGACCG- -5'
miRNA: 3'- -GGCUCGGUUAUUUCUUAAAGGGACCG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31321 | 3' | -46.1 | NC_006623.1 | + | 102539 | 0.69 | 0.999246 |
|
Target: 5'- gUCGAugcGCCca-GGAGAAUUUCCCUGa- -3' miRNA: 3'- -GGCU---CGGuuaUUUCUUAAAGGGACcg -5' |
|||||||
| 31321 | 3' | -46.1 | NC_006623.1 | + | 31146 | 0.69 | 0.998857 |
|
Target: 5'- gCCGAGCUGAggcAGAAUUUauauauagCCCUgauGGCa -3' miRNA: 3'- -GGCUCGGUUauuUCUUAAA--------GGGA---CCG- -5' |
|||||||
| 31321 | 3' | -46.1 | NC_006623.1 | + | 64237 | 0.74 | 0.967211 |
|
Target: 5'- uUCGAGCCAAUcca-AAUUUUCCUGGg -3' miRNA: 3'- -GGCUCGGUUAuuucUUAAAGGGACCg -5' |
|||||||
| 31321 | 3' | -46.1 | NC_006623.1 | + | 124517 | 0.79 | 0.830738 |
|
Target: 5'- uUCGAGCCu---GAGAAcg-CCCUGGCc -3' miRNA: 3'- -GGCUCGGuuauUUCUUaaaGGGACCG- -5' |
|||||||
| 31321 | 3' | -46.1 | NC_006623.1 | + | 66353 | 1.15 | 0.011928 |
|
Target: 5'- cCCGAGCCAAUAAAGAAUUUCCCUGGCc -3' miRNA: 3'- -GGCUCGGUUAUUUCUUAAAGGGACCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home