Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3133 | 3' | -56.7 | NC_001493.1 | + | 80557 | 0.66 | 0.884845 |
Target: 5'- aCGAGaCGGAUGAUCUcGGCCuuuCCGu -3' miRNA: 3'- gGCUCcGCCUGCUAGA-CUGGucuGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 31199 | 0.66 | 0.877874 |
Target: 5'- aCCGccGCGGccGCGGUCUGugaCGGACUg -3' miRNA: 3'- -GGCucCGCC--UGCUAGACug-GUCUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 21390 | 0.66 | 0.877874 |
Target: 5'- aCCaGGGGCGG-CGGcCUGAaggUCGGGCCu -3' miRNA: 3'- -GG-CUCCGCCuGCUaGACU---GGUCUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 126618 | 0.66 | 0.870687 |
Target: 5'- cCCGuGGGaCGGACGcUCacacCCAGACCGa -3' miRNA: 3'- -GGC-UCC-GCCUGCuAGacu-GGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 11063 | 0.66 | 0.870687 |
Target: 5'- cCCGuGGGaCGGACGcUCacacCCAGACCGa -3' miRNA: 3'- -GGC-UCC-GCCUGCuAGacu-GGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 87933 | 0.66 | 0.863291 |
Target: 5'- cCCGGGGCGuACGAg--GAgCCGGAUCu -3' miRNA: 3'- -GGCUCCGCcUGCUagaCU-GGUCUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 87975 | 0.66 | 0.863291 |
Target: 5'- cCCGGGGCGuACGAg--GAgCCGGAUCu -3' miRNA: 3'- -GGCUCCGCcUGCUagaCU-GGUCUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 74008 | 0.67 | 0.855689 |
Target: 5'- gCGAGGauG-CGAUCaUGAuCCAGGCCc -3' miRNA: 3'- gGCUCCgcCuGCUAG-ACU-GGUCUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 72414 | 0.67 | 0.84789 |
Target: 5'- cCCGAGGUGGAagcagacgcgGAUCaUGcucgugaauuacACCAGACCc -3' miRNA: 3'- -GGCUCCGCCUg---------CUAG-AC------------UGGUCUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 108857 | 0.67 | 0.835013 |
Target: 5'- aCGAGcagcucucucGCGGugGGUCUGaacuggggguagagcGCCAGACa- -3' miRNA: 3'- gGCUC----------CGCCugCUAGAC---------------UGGUCUGgu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 81421 | 0.67 | 0.83172 |
Target: 5'- cCCGAGGCGGcccuguuacACGAgCaGACCcacGACCu -3' miRNA: 3'- -GGCUCCGCC---------UGCUaGaCUGGu--CUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 59747 | 0.67 | 0.823364 |
Target: 5'- cCCGugaaGGGCgGGACGGacugggaaccgUcCUGAUCAGGCCGg -3' miRNA: 3'- -GGC----UCCG-CCUGCU-----------A-GACUGGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 54978 | 0.68 | 0.80527 |
Target: 5'- aCGAGGCGcccguugcGACGGUCUcaucaccGACCucacccAGACCGa -3' miRNA: 3'- gGCUCCGC--------CUGCUAGA-------CUGG------UCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 23691 | 0.68 | 0.797304 |
Target: 5'- cCCG-GGCGG--GAUCaUGACC-GACCAg -3' miRNA: 3'- -GGCuCCGCCugCUAG-ACUGGuCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 119341 | 0.68 | 0.769926 |
Target: 5'- gCGAGGCGcGGCGGUUucgaggugaUGugCGGGuCCAu -3' miRNA: 3'- gGCUCCGC-CUGCUAG---------ACugGUCU-GGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 53025 | 0.68 | 0.769926 |
Target: 5'- aCGcGGCGGACGAcccuuucCUGGCCgAGuCCAu -3' miRNA: 3'- gGCuCCGCCUGCUa------GACUGG-UCuGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 3787 | 0.68 | 0.769926 |
Target: 5'- gCGAGGCGcGGCGGUUucgaggugaUGugCGGGuCCAu -3' miRNA: 3'- gGCUCCGC-CUGCUAG---------ACugGUCU-GGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 38576 | 0.69 | 0.722004 |
Target: 5'- gCCGAGGCcauggagucGAUGGUCgcGACCAGACa- -3' miRNA: 3'- -GGCUCCGc--------CUGCUAGa-CUGGUCUGgu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 28310 | 0.69 | 0.722004 |
Target: 5'- aCCGAGGCGG-CGAaCacgUGugCGGACaCGa -3' miRNA: 3'- -GGCUCCGCCuGCUaG---ACugGUCUG-GU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 45895 | 0.69 | 0.712156 |
Target: 5'- gCGAGGCGGccagaaaaAUGAcCUGACUgacgGGGCCAu -3' miRNA: 3'- gGCUCCGCC--------UGCUaGACUGG----UCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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