miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3133 5' -56 NC_001493.1 + 94729 0.66 0.899386
Target:  5'- gAUGGCCGUgucCGAcgCCCCGaUGCg--- -3'
miRNA:   3'- gUGCCGGCA---GUUuaGGGGC-ACGacuc -5'
3133 5' -56 NC_001493.1 + 30518 0.66 0.899386
Target:  5'- gGCGaucccccuuGCCGUCAAcgCCCCGUccGCggucGGGa -3'
miRNA:   3'- gUGC---------CGGCAGUUuaGGGGCA--CGa---CUC- -5'
3133 5' -56 NC_001493.1 + 95534 0.66 0.892795
Target:  5'- cCACGGCuCGcCcGGUCCCCGUGa---- -3'
miRNA:   3'- -GUGCCG-GCaGuUUAGGGGCACgacuc -5'
3133 5' -56 NC_001493.1 + 55889 0.66 0.892795
Target:  5'- -uCGGCuCGgagCAGuacuUCCCCGUGCauucGAGg -3'
miRNA:   3'- guGCCG-GCa--GUUu---AGGGGCACGa---CUC- -5'
3133 5' -56 NC_001493.1 + 97240 0.67 0.856456
Target:  5'- aACGGCCGggCAGA-CCCCGagGUgGAGc -3'
miRNA:   3'- gUGCCGGCa-GUUUaGGGGCa-CGaCUC- -5'
3133 5' -56 NC_001493.1 + 130413 0.67 0.848547
Target:  5'- uCACGGCCGUCAucAUCaCCguggGUGCUcucgucGAGa -3'
miRNA:   3'- -GUGCCGGCAGUu-UAG-GGg---CACGA------CUC- -5'
3133 5' -56 NC_001493.1 + 14859 0.67 0.848547
Target:  5'- uCACGGCCGUCAucAUCaCCguggGUGCUcucgucGAGa -3'
miRNA:   3'- -GUGCCGGCAGUu-UAG-GGg---CACGA------CUC- -5'
3133 5' -56 NC_001493.1 + 100777 0.67 0.84044
Target:  5'- cCACGGCCGUU--AUCCCCc--CUGGa -3'
miRNA:   3'- -GUGCCGGCAGuuUAGGGGcacGACUc -5'
3133 5' -56 NC_001493.1 + 58011 0.68 0.806165
Target:  5'- gGCGGuacCCGUCAAAUCCCgG-GCauugucggUGAGg -3'
miRNA:   3'- gUGCC---GGCAGUUUAGGGgCaCG--------ACUC- -5'
3133 5' -56 NC_001493.1 + 25479 0.68 0.797176
Target:  5'- uCACGGCCGUCGuacucaacacGGUCUCCGg---GGGg -3'
miRNA:   3'- -GUGCCGGCAGU----------UUAGGGGCacgaCUC- -5'
3133 5' -56 NC_001493.1 + 3175 0.68 0.788035
Target:  5'- cCGCGGCCGUCccAUCCaCCaucccGUUGAGc -3'
miRNA:   3'- -GUGCCGGCAGuuUAGG-GGca---CGACUC- -5'
3133 5' -56 NC_001493.1 + 118729 0.68 0.788035
Target:  5'- cCGCGGCCGUCccAUCCaCCaucccGUUGAGc -3'
miRNA:   3'- -GUGCCGGCAGuuUAGG-GGca---CGACUC- -5'
3133 5' -56 NC_001493.1 + 110988 0.68 0.769336
Target:  5'- gCACGacGCCGUCA---CCCCGUGUgaacaGAGa -3'
miRNA:   3'- -GUGC--CGGCAGUuuaGGGGCACGa----CUC- -5'
3133 5' -56 NC_001493.1 + 31081 0.69 0.758836
Target:  5'- cCGCGGCCGUCAccgggacGGUCCacgCCGUGaccgguggcaUGGGg -3'
miRNA:   3'- -GUGCCGGCAGU-------UUAGG---GGCACg---------ACUC- -5'
3133 5' -56 NC_001493.1 + 42326 0.69 0.720583
Target:  5'- cCACGcGCCGUCcGAUCCCCGa---GAGa -3'
miRNA:   3'- -GUGC-CGGCAGuUUAGGGGCacgaCUC- -5'
3133 5' -56 NC_001493.1 + 29527 0.69 0.720583
Target:  5'- -cUGGCUGUCGAcacaCCCGUGUUGAu -3'
miRNA:   3'- guGCCGGCAGUUuag-GGGCACGACUc -5'
3133 5' -56 NC_001493.1 + 49768 0.7 0.684222
Target:  5'- -uCGGCCGUgcugacggugguguaCAAcccCCCUGUGCUGGGg -3'
miRNA:   3'- guGCCGGCA---------------GUUua-GGGGCACGACUC- -5'
3133 5' -56 NC_001493.1 + 15713 0.71 0.639051
Target:  5'- gCACGGCCGUgCGAccgcUCCCCGaccuggaacgGCUGAu -3'
miRNA:   3'- -GUGCCGGCA-GUUu---AGGGGCa---------CGACUc -5'
3133 5' -56 NC_001493.1 + 131267 0.71 0.639051
Target:  5'- gCACGGCCGUgCGAccgcUCCCCGaccuggaacgGCUGAu -3'
miRNA:   3'- -GUGCCGGCA-GUUu---AGGGGCa---------CGACUc -5'
3133 5' -56 NC_001493.1 + 126753 1.09 0.002463
Target:  5'- cCACGGCCGUCAAAUCCCCGUGCUGAGg -3'
miRNA:   3'- -GUGCCGGCAGUUUAGGGGCACGACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.