miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31335 3' -61.7 NC_006623.1 + 9832 0.66 0.652795
Target:  5'- aAGCGGCugUUUGCUcaUCUGCacCUCGUg -3'
miRNA:   3'- -UCGCCGugGAACGGc-GGACGc-GAGCG- -5'
31335 3' -61.7 NC_006623.1 + 127485 0.66 0.652795
Target:  5'- cGCGGCguccaagacACCUcGCgcuucgaGCCUGCGCUgGg -3'
miRNA:   3'- uCGCCG---------UGGAaCGg------CGGACGCGAgCg -5'
31335 3' -61.7 NC_006623.1 + 7857 0.66 0.652795
Target:  5'- gGGCGGguUUggGCCaCCgugGCGgUCGCa -3'
miRNA:   3'- -UCGCCguGGaaCGGcGGa--CGCgAGCG- -5'
31335 3' -61.7 NC_006623.1 + 122890 0.66 0.626939
Target:  5'- uGGCGGCAgCCgcGCCGgC-GCGCaaggcggccagguauUCGCg -3'
miRNA:   3'- -UCGCCGU-GGaaCGGCgGaCGCG---------------AGCG- -5'
31335 3' -61.7 NC_006623.1 + 107520 0.66 0.603091
Target:  5'- aGGgGGUGCCguauaccGCCcaGCUUGCGC-CGCa -3'
miRNA:   3'- -UCgCCGUGGaa-----CGG--CGGACGCGaGCG- -5'
31335 3' -61.7 NC_006623.1 + 46257 0.67 0.583303
Target:  5'- cGGCGcGcCGCCUguagcuugGCUGCUgaacuUGCGCUgGCa -3'
miRNA:   3'- -UCGC-C-GUGGAa-------CGGCGG-----ACGCGAgCG- -5'
31335 3' -61.7 NC_006623.1 + 124327 0.67 0.573456
Target:  5'- cGGCGGCcgcuGCCggaauaGUgGCCUGgGC-CGCg -3'
miRNA:   3'- -UCGCCG----UGGaa----CGgCGGACgCGaGCG- -5'
31335 3' -61.7 NC_006623.1 + 137285 0.67 0.573456
Target:  5'- cGGCGGCcgcuGCCggaauaGUgGCCUGgGC-CGCg -3'
miRNA:   3'- -UCGCCG----UGGaa----CGgCGGACgCGaGCG- -5'
31335 3' -61.7 NC_006623.1 + 124362 0.67 0.563648
Target:  5'- cGCGGCGCCgacguuaGCgGCga-CGCUCGCc -3'
miRNA:   3'- uCGCCGUGGaa-----CGgCGgacGCGAGCG- -5'
31335 3' -61.7 NC_006623.1 + 133600 0.67 0.543205
Target:  5'- cGCGGCguucguaGCCUgcGCgGUC-GCGCUCGUg -3'
miRNA:   3'- uCGCCG-------UGGAa-CGgCGGaCGCGAGCG- -5'
31335 3' -61.7 NC_006623.1 + 53552 0.68 0.534517
Target:  5'- uGCGGUACCgaaguucgGCCGCgacauuggCUGUGUgCGCa -3'
miRNA:   3'- uCGCCGUGGaa------CGGCG--------GACGCGaGCG- -5'
31335 3' -61.7 NC_006623.1 + 109584 0.69 0.433295
Target:  5'- uAGgGGUACCggccUGCCGCCUG-GUUUGa -3'
miRNA:   3'- -UCgCCGUGGa---ACGGCGGACgCGAGCg -5'
31335 3' -61.7 NC_006623.1 + 137884 0.7 0.416093
Target:  5'- cGaCGGCGCgCUUaGCCGCggGCGCuauUCGCg -3'
miRNA:   3'- uC-GCCGUG-GAA-CGGCGgaCGCG---AGCG- -5'
31335 3' -61.7 NC_006623.1 + 122701 0.7 0.391092
Target:  5'- cGCGaaUACCUgGCCGCCuUGCGCgccggCGCg -3'
miRNA:   3'- uCGCc-GUGGAaCGGCGG-ACGCGa----GCG- -5'
31335 3' -61.7 NC_006623.1 + 138911 0.7 0.391092
Target:  5'- cGCGaaUACCUgGCCGCCuUGCGCgccggCGCg -3'
miRNA:   3'- uCGCc-GUGGAaCGGCGG-ACGCGa----GCG- -5'
31335 3' -61.7 NC_006623.1 + 123728 0.7 0.382979
Target:  5'- cGaCGGCGCgCUUaGCCGCggGCGCauUCGCg -3'
miRNA:   3'- uC-GCCGUG-GAA-CGGCGgaCGCG--AGCG- -5'
31335 3' -61.7 NC_006623.1 + 115042 0.71 0.344123
Target:  5'- aAGCGGCGCg--GCCGCCaGCGCcUCcCg -3'
miRNA:   3'- -UCGCCGUGgaaCGGCGGaCGCG-AGcG- -5'
31335 3' -61.7 NC_006623.1 + 139566 0.71 0.344123
Target:  5'- cGCGGUACCUcGUgGCgaGCGCagGCg -3'
miRNA:   3'- uCGCCGUGGAaCGgCGgaCGCGagCG- -5'
31335 3' -61.7 NC_006623.1 + 146570 0.71 0.344123
Target:  5'- aAGCGGCGCg--GCCGCCaGCGCcUCcCg -3'
miRNA:   3'- -UCGCCGUGgaaCGGCGGaCGCG-AGcG- -5'
31335 3' -61.7 NC_006623.1 + 122046 0.71 0.344123
Target:  5'- cGCGGUACCUcGUgGCgaGCGCagGCg -3'
miRNA:   3'- uCGCCGUGGAaCGgCGgaCGCGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.