Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31335 | 3' | -61.7 | NC_006623.1 | + | 109584 | 0.69 | 0.433295 |
Target: 5'- uAGgGGUACCggccUGCCGCCUG-GUUUGa -3' miRNA: 3'- -UCgCCGUGGa---ACGGCGGACgCGAGCg -5' |
|||||||
31335 | 3' | -61.7 | NC_006623.1 | + | 133600 | 0.67 | 0.543205 |
Target: 5'- cGCGGCguucguaGCCUgcGCgGUC-GCGCUCGUg -3' miRNA: 3'- uCGCCG-------UGGAa-CGgCGGaCGCGAGCG- -5' |
|||||||
31335 | 3' | -61.7 | NC_006623.1 | + | 137285 | 0.67 | 0.573456 |
Target: 5'- cGGCGGCcgcuGCCggaauaGUgGCCUGgGC-CGCg -3' miRNA: 3'- -UCGCCG----UGGaa----CGgCGGACgCGaGCG- -5' |
|||||||
31335 | 3' | -61.7 | NC_006623.1 | + | 7857 | 0.66 | 0.652795 |
Target: 5'- gGGCGGguUUggGCCaCCgugGCGgUCGCa -3' miRNA: 3'- -UCGCCguGGaaCGGcGGa--CGCgAGCG- -5' |
|||||||
31335 | 3' | -61.7 | NC_006623.1 | + | 127485 | 0.66 | 0.652795 |
Target: 5'- cGCGGCguccaagacACCUcGCgcuucgaGCCUGCGCUgGg -3' miRNA: 3'- uCGCCG---------UGGAaCGg------CGGACGCGAgCg -5' |
|||||||
31335 | 3' | -61.7 | NC_006623.1 | + | 139378 | 1.1 | 0.000694 |
Target: 5'- cAGCGGCACCUUGCCGCCUGCGCUCGCc -3' miRNA: 3'- -UCGCCGUGGAACGGCGGACGCGAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home