miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31336 3' -57.4 NC_006623.1 + 145934 0.66 0.888625
Target:  5'- uCCgcagaGGGCCgcgUAGGCguaCGCGCGuucuaaaaauUCGCCCg -3'
miRNA:   3'- -GGag---UUUGG---AUCCG---GCGCGC----------AGCGGG- -5'
31336 3' -57.4 NC_006623.1 + 115678 0.66 0.888625
Target:  5'- uCCgcagaGGGCCgcgUAGGCguaCGCGCGuucuaaaaauUCGCCCg -3'
miRNA:   3'- -GGag---UUUGG---AUCCG---GCGCGC----------AGCGGG- -5'
31336 3' -57.4 NC_006623.1 + 134300 0.66 0.888625
Target:  5'- aCUCuauuCCaAGGCUuCGUGUCGCaCCu -3'
miRNA:   3'- gGAGuuu-GGaUCCGGcGCGCAGCG-GG- -5'
31336 3' -57.4 NC_006623.1 + 124149 0.66 0.882538
Target:  5'- gCC-CAGGCCacuauuccggcagcGGCCGCcgacgcggcgaGCGUCGCCg -3'
miRNA:   3'- -GGaGUUUGGau------------CCGGCG-----------CGCAGCGGg -5'
31336 3' -57.4 NC_006623.1 + 7946 0.66 0.881851
Target:  5'- aCCUCGcuCacgcAGGCCG-GuCGUCGCCg -3'
miRNA:   3'- -GGAGUuuGga--UCCGGCgC-GCAGCGGg -5'
31336 3' -57.4 NC_006623.1 + 138076 0.66 0.870571
Target:  5'- cCCUCccggaAGACCUccccgaAGGuucccaaaacucgauCCGCGCGUUcgugGCCCa -3'
miRNA:   3'- -GGAG-----UUUGGA------UCC---------------GGCGCGCAG----CGGG- -5'
31336 3' -57.4 NC_006623.1 + 123536 0.66 0.870571
Target:  5'- cCCUCccggaAGACCUccccgaAGGuucccaaaacucgauCCGCGCGUUcgugGCCCa -3'
miRNA:   3'- -GGAG-----UUUGGA------UCC---------------GGCGCGCAG----CGGG- -5'
31336 3' -57.4 NC_006623.1 + 4759 0.66 0.852672
Target:  5'- cCCUaaaAAGgCUAGGCCGgucaGUggaaGUCGCCUa -3'
miRNA:   3'- -GGAg--UUUgGAUCCGGCg---CG----CAGCGGG- -5'
31336 3' -57.4 NC_006623.1 + 40542 0.67 0.836909
Target:  5'- --cCAAGCCgcAGGUCGCcgcacgGCGUCGCUg -3'
miRNA:   3'- ggaGUUUGGa-UCCGGCG------CGCAGCGGg -5'
31336 3' -57.4 NC_006623.1 + 115887 0.67 0.836909
Target:  5'- gUCUCAGaacguGCCccGGGCgaauuuuuagaaCGCGCGUaCGCCUa -3'
miRNA:   3'- -GGAGUU-----UGGa-UCCG------------GCGCGCA-GCGGG- -5'
31336 3' -57.4 NC_006623.1 + 145724 0.67 0.836909
Target:  5'- gUCUCAGaacguGCCccGGGCgaauuuuuagaaCGCGCGUaCGCCUa -3'
miRNA:   3'- -GGAGUU-----UGGa-UCCG------------GCGCGCA-GCGGG- -5'
31336 3' -57.4 NC_006623.1 + 144472 0.68 0.785563
Target:  5'- --aUAAACCcc-GCCaaGCGUCGCCCg -3'
miRNA:   3'- ggaGUUUGGaucCGGcgCGCAGCGGG- -5'
31336 3' -57.4 NC_006623.1 + 117140 0.68 0.785563
Target:  5'- --aUAAACCcc-GCCaaGCGUCGCCCg -3'
miRNA:   3'- ggaGUUUGGaucCGGcgCGCAGCGGG- -5'
31336 3' -57.4 NC_006623.1 + 137296 0.69 0.739065
Target:  5'- gCCggaauaguGGCCUGGGCCGCgGCGagGgCCu -3'
miRNA:   3'- -GGagu-----UUGGAUCCGGCG-CGCagCgGG- -5'
31336 3' -57.4 NC_006623.1 + 124316 0.69 0.739065
Target:  5'- gCCggaauaguGGCCUGGGCCGCgGCGagGgCCu -3'
miRNA:   3'- -GGagu-----UUGGAUCCGGCG-CGCagCgGG- -5'
31336 3' -57.4 NC_006623.1 + 148212 0.7 0.670449
Target:  5'- cCCUgGAgGCC--GGCCGCGCGcaUGCCCc -3'
miRNA:   3'- -GGAgUU-UGGauCCGGCGCGCa-GCGGG- -5'
31336 3' -57.4 NC_006623.1 + 113400 0.7 0.670449
Target:  5'- cCCUgGAgGCC--GGCCGCGCGcaUGCCCc -3'
miRNA:   3'- -GGAgUU-UGGauCCGGCGCGCa-GCGGG- -5'
31336 3' -57.4 NC_006623.1 + 136773 0.7 0.650449
Target:  5'- uUCUUAAACCUGuucuugcccgcGGCCGCGUcuUCgGCCCc -3'
miRNA:   3'- -GGAGUUUGGAU-----------CCGGCGCGc-AG-CGGG- -5'
31336 3' -57.4 NC_006623.1 + 143655 0.74 0.456237
Target:  5'- uCC-CAGACCUAGGCCGCgGCaUUaCCCu -3'
miRNA:   3'- -GGaGUUUGGAUCCGGCG-CGcAGcGGG- -5'
31336 3' -57.4 NC_006623.1 + 117957 0.74 0.456237
Target:  5'- uCC-CAGACCUAGGCCGCgGCaUUaCCCu -3'
miRNA:   3'- -GGaGUUUGGAUCCGGCG-CGcAGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.