miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3134 5' -59.3 NC_001493.1 + 119127 0.66 0.796758
Target:  5'- gCGAGAacaCGGAGCgagucaucgcuacacGCCGAUGGGgaaaAGACc -3'
miRNA:   3'- -GCUCUg--GCCUCG---------------CGGCUGUCC----UCUGc -5'
3134 5' -59.3 NC_001493.1 + 3573 0.66 0.796758
Target:  5'- gCGAGAacaCGGAGCgagucaucgcuacacGCCGAUGGGgaaaAGACc -3'
miRNA:   3'- -GCUCUg--GCCUCG---------------CGGCUGUCC----UCUGc -5'
3134 5' -59.3 NC_001493.1 + 66020 0.66 0.793239
Target:  5'- aCGGcGACCGccGCGUCGAUaaacuccggaGGGAGugGg -3'
miRNA:   3'- -GCU-CUGGCcuCGCGGCUG----------UCCUCugC- -5'
3134 5' -59.3 NC_001493.1 + 114137 0.66 0.793239
Target:  5'- aCGGGACCaucugggaGGAcGCGCCaaucGCGGG-GACGu -3'
miRNA:   3'- -GCUCUGG--------CCU-CGCGGc---UGUCCuCUGC- -5'
3134 5' -59.3 NC_001493.1 + 118918 0.66 0.793239
Target:  5'- -uGGACCaGAGCGCCGGgGuGGugaucGACGa -3'
miRNA:   3'- gcUCUGGcCUCGCGGCUgU-CCu----CUGC- -5'
3134 5' -59.3 NC_001493.1 + 3364 0.66 0.793239
Target:  5'- -uGGACCaGAGCGCCGGgGuGGugaucGACGa -3'
miRNA:   3'- gcUCUGGcCUCGCGGCUgU-CCu----CUGC- -5'
3134 5' -59.3 NC_001493.1 + 33111 0.66 0.766182
Target:  5'- gCGAGcgaACCuGAuCGCCGagGCGGGAGAUGa -3'
miRNA:   3'- -GCUC---UGGcCUcGCGGC--UGUCCUCUGC- -5'
3134 5' -59.3 NC_001493.1 + 87983 0.66 0.756926
Target:  5'- uCGAGACuCGGAGuCGaCCGAggucuggAGGAGAUc -3'
miRNA:   3'- -GCUCUG-GCCUC-GC-GGCUg------UCCUCUGc -5'
3134 5' -59.3 NC_001493.1 + 3413 0.66 0.747566
Target:  5'- aGAGAgCGaGAGC-CC-ACGGGAGGCu -3'
miRNA:   3'- gCUCUgGC-CUCGcGGcUGUCCUCUGc -5'
3134 5' -59.3 NC_001493.1 + 118967 0.66 0.747566
Target:  5'- aGAGAgCGaGAGC-CC-ACGGGAGGCu -3'
miRNA:   3'- gCUCUgGC-CUCGcGGcUGUCCUCUGc -5'
3134 5' -59.3 NC_001493.1 + 95645 0.67 0.728565
Target:  5'- gGAcACCGGAGCGgUuACAGGAGGa- -3'
miRNA:   3'- gCUcUGGCCUCGCgGcUGUCCUCUgc -5'
3134 5' -59.3 NC_001493.1 + 125261 0.67 0.728565
Target:  5'- gGuAGGCCGuGAGC-CCGAgAGGAGGa- -3'
miRNA:   3'- gC-UCUGGC-CUCGcGGCUgUCCUCUgc -5'
3134 5' -59.3 NC_001493.1 + 21942 0.67 0.718943
Target:  5'- aGGG-UCaGGGCGCUGGCGcGGAGACu -3'
miRNA:   3'- gCUCuGGcCUCGCGGCUGU-CCUCUGc -5'
3134 5' -59.3 NC_001493.1 + 92987 0.68 0.66002
Target:  5'- gGGGuuCGGGGaCGCCGuCGGGugGGGCGa -3'
miRNA:   3'- gCUCugGCCUC-GCGGCuGUCC--UCUGC- -5'
3134 5' -59.3 NC_001493.1 + 123769 0.68 0.66002
Target:  5'- gCGAGACCGagcccgcaccccGAGCGgUGACgaAGGAgGGCGg -3'
miRNA:   3'- -GCUCUGGC------------CUCGCgGCUG--UCCU-CUGC- -5'
3134 5' -59.3 NC_001493.1 + 111499 0.68 0.66002
Target:  5'- -cGGACCGGugAGCGCCaucGACGaGAGAUGg -3'
miRNA:   3'- gcUCUGGCC--UCGCGG---CUGUcCUCUGC- -5'
3134 5' -59.3 NC_001493.1 + 8215 0.68 0.66002
Target:  5'- gCGAGACCGagcccgcaccccGAGCGgUGACgaAGGAgGGCGg -3'
miRNA:   3'- -GCUCUGGC------------CUCGCgGCUG--UCCU-CUGC- -5'
3134 5' -59.3 NC_001493.1 + 130825 0.69 0.620203
Target:  5'- cCGAGAcucccgaaCCGGGGCGCCaucACGGGGaACGu -3'
miRNA:   3'- -GCUCU--------GGCCUCGCGGc--UGUCCUcUGC- -5'
3134 5' -59.3 NC_001493.1 + 15271 0.69 0.620203
Target:  5'- cCGAGAcucccgaaCCGGGGCGCCaucACGGGGaACGu -3'
miRNA:   3'- -GCUCU--------GGCCUCGCGGc--UGUCCUcUGC- -5'
3134 5' -59.3 NC_001493.1 + 51522 0.69 0.610251
Target:  5'- gGGGACCuGGAcCGCC-ACGGGAGGgGg -3'
miRNA:   3'- gCUCUGG-CCUcGCGGcUGUCCUCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.