miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3135 5' -62.6 NC_001493.1 + 26228 0.69 0.439435
Target:  5'- gGGCcgaaACCCGgGCCCGUCUgggUCGaCCCg -3'
miRNA:   3'- -CCG----UGGGCgCGGGUAGGug-AGCgGGG- -5'
3135 5' -62.6 NC_001493.1 + 26292 0.68 0.49658
Target:  5'- cGGCACCgCGcCGuCCCAgugauucuucgucuuUCCGa--GCCCCg -3'
miRNA:   3'- -CCGUGG-GC-GC-GGGU---------------AGGUgagCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 27984 0.67 0.568396
Target:  5'- cGGCACCCGaaCCCGUaucCCAgUuacCGCCgCCa -3'
miRNA:   3'- -CCGUGGGCgcGGGUA---GGUgA---GCGG-GG- -5'
3135 5' -62.6 NC_001493.1 + 29528 0.69 0.428288
Target:  5'- aGCGCCCGCGgUCAcaaaCCGCUguucacgcgcacugCGCCCUg -3'
miRNA:   3'- cCGUGGGCGCgGGUa---GGUGA--------------GCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 29636 0.68 0.492907
Target:  5'- -cCGCCUGCGCCUugugCUGCUCGUCgCg -3'
miRNA:   3'- ccGUGGGCGCGGGua--GGUGAGCGGgG- -5'
3135 5' -62.6 NC_001493.1 + 31505 0.79 0.102527
Target:  5'- -cCGCCCGCGCCCA-CCuCUCGgCCCa -3'
miRNA:   3'- ccGUGGGCGCGGGUaGGuGAGCgGGG- -5'
3135 5' -62.6 NC_001493.1 + 32762 0.66 0.59752
Target:  5'- uGGC-CCCGgaccguaaaCGCCCGUCCcGgUCGCgaCCg -3'
miRNA:   3'- -CCGuGGGC---------GCGGGUAGG-UgAGCGg-GG- -5'
3135 5' -62.6 NC_001493.1 + 36393 0.66 0.607282
Target:  5'- cGCaACCCGC-CCCAcugagcacccCCGCgcaggcCGCCCCg -3'
miRNA:   3'- cCG-UGGGCGcGGGUa---------GGUGa-----GCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 36983 0.68 0.483779
Target:  5'- cGGUACCCGaucgguucCCCAUgacgggcuacCCGUUCGCCCCc -3'
miRNA:   3'- -CCGUGGGCgc------GGGUA----------GGUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 42330 0.66 0.607282
Target:  5'- cGCGCCaCGCG-CCGUCCGau--CCCCg -3'
miRNA:   3'- cCGUGG-GCGCgGGUAGGUgagcGGGG- -5'
3135 5' -62.6 NC_001493.1 + 44078 0.66 0.617062
Target:  5'- uGCGCgCCGCGUCCAUgaaCGCgaagCGCaCCg -3'
miRNA:   3'- cCGUG-GGCGCGGGUAg--GUGa---GCGgGG- -5'
3135 5' -62.6 NC_001493.1 + 47939 0.66 0.585836
Target:  5'- cGGagaGCCCGUGCCCcgugaaccucgugGUCCGCaCGCauagguacgagaaCCCg -3'
miRNA:   3'- -CCg--UGGGCGCGGG-------------UAGGUGaGCG-------------GGG- -5'
3135 5' -62.6 NC_001493.1 + 55036 0.68 0.511394
Target:  5'- gGGCGCugaCCGUgggcgGCUCGcaCCACUCGCUCCc -3'
miRNA:   3'- -CCGUG---GGCG-----CGGGUa-GGUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 59892 0.66 0.58778
Target:  5'- uGCGCcgCCGUGCUCGU-CAC-CGUCCCa -3'
miRNA:   3'- cCGUG--GGCGCGGGUAgGUGaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 59973 0.68 0.501189
Target:  5'- -uCAUCCGcCGCCCcaccgAUCCucgggaauauguuACUCGCCCUg -3'
miRNA:   3'- ccGUGGGC-GCGGG-----UAGG-------------UGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 60612 0.68 0.492907
Target:  5'- ---cCCCGUGCacgacaCCGUCCACUUcCCCCg -3'
miRNA:   3'- ccguGGGCGCG------GGUAGGUGAGcGGGG- -5'
3135 5' -62.6 NC_001493.1 + 61336 0.68 0.499344
Target:  5'- aGGCAgguuggcccggaguCCCGCGaCCCAgUCCA-UC-CCCCg -3'
miRNA:   3'- -CCGU--------------GGGCGC-GGGU-AGGUgAGcGGGG- -5'
3135 5' -62.6 NC_001493.1 + 61392 0.72 0.310681
Target:  5'- gGGUACCCGCGCUCAaauguucaugggggaUUcgauggCACUCGCCUUc -3'
miRNA:   3'- -CCGUGGGCGCGGGU---------------AG------GUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 62463 0.69 0.448121
Target:  5'- cGUGCCCGUGCCCGUggccggcucCCGCggGCUUCg -3'
miRNA:   3'- cCGUGGGCGCGGGUA---------GGUGagCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 68296 0.67 0.558763
Target:  5'- cGCACCCGUGaaggCAUCgAC-CGCCgCCg -3'
miRNA:   3'- cCGUGGGCGCgg--GUAGgUGaGCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.