miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3135 5' -62.6 NC_001493.1 + 3045 0.66 0.607282
Target:  5'- uGGCAUCCuCGaCCuCGUCCGggucCUCGUCCg -3'
miRNA:   3'- -CCGUGGGcGC-GG-GUAGGU----GAGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 3108 0.67 0.530162
Target:  5'- cGGUGCCCGguucCUCAUCCuuCUCGUCCUc -3'
miRNA:   3'- -CCGUGGGCgc--GGGUAGGu-GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 3210 0.67 0.53964
Target:  5'- -cCACCCcgGCGCUCugGUCCAUcaugUCGCCCa -3'
miRNA:   3'- ccGUGGG--CGCGGG--UAGGUG----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 4559 0.67 0.53964
Target:  5'- cGCugCCGCGCCC--CCGggugUGCCCa -3'
miRNA:   3'- cCGugGGCGCGGGuaGGUga--GCGGGg -5'
3135 5' -62.6 NC_001493.1 + 5338 0.67 0.520745
Target:  5'- aGGCGCCUGacgaggaaGUCCAccggcugCaCGCUCGgCCCCg -3'
miRNA:   3'- -CCGUGGGCg-------CGGGUa------G-GUGAGC-GGGG- -5'
3135 5' -62.6 NC_001493.1 + 7874 0.66 0.607282
Target:  5'- gGGCgACCgGUGUCCAUCC-CUCaccgaGUCUCg -3'
miRNA:   3'- -CCG-UGGgCGCGGGUAGGuGAG-----CGGGG- -5'
3135 5' -62.6 NC_001493.1 + 8322 0.69 0.451622
Target:  5'- uGGCGCgCCGUGCCCgcuucgaaccguggaGgggCCGCgcgucUCGCCCg -3'
miRNA:   3'- -CCGUG-GGCGCGGG---------------Ua--GGUG-----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 8822 0.67 0.549175
Target:  5'- cGGCGCgUG-GCCCGUCCGUgucCGCaCCCc -3'
miRNA:   3'- -CCGUGgGCgCGGGUAGGUGa--GCG-GGG- -5'
3135 5' -62.6 NC_001493.1 + 9961 0.71 0.328819
Target:  5'- uGCGCCCGCGCCgA---GCUCGacguCCCCg -3'
miRNA:   3'- cCGUGGGCGCGGgUaggUGAGC----GGGG- -5'
3135 5' -62.6 NC_001493.1 + 13094 0.69 0.404858
Target:  5'- aGCGCCCGCGCgaauaccUCAUCC--UCGUCCUc -3'
miRNA:   3'- cCGUGGGCGCG-------GGUAGGugAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 13346 0.67 0.54822
Target:  5'- cGGCGggacgugUUCGCGCCCGaccuguacgguUCCGgaccgcucccccCUUGCCCCg -3'
miRNA:   3'- -CCGU-------GGGCGCGGGU-----------AGGU------------GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 14382 0.68 0.465773
Target:  5'- cGGCcCCCGCGUCgc-UCAgUCGCCCg -3'
miRNA:   3'- -CCGuGGGCGCGGguaGGUgAGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 14465 1.11 0.000486
Target:  5'- uGGCACCCGCGCCCAUCCACUCGCCCCc -3'
miRNA:   3'- -CCGUGGGCGCGGGUAGGUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 14950 0.68 0.474734
Target:  5'- gGGUGCCauaGCGCUC--CCGCUCcGCUCCu -3'
miRNA:   3'- -CCGUGGg--CGCGGGuaGGUGAG-CGGGG- -5'
3135 5' -62.6 NC_001493.1 + 15070 0.68 0.465773
Target:  5'- cGgGCCCGCaCCCGcaCCGCUCccuccgggGCCCCu -3'
miRNA:   3'- cCgUGGGCGcGGGUa-GGUGAG--------CGGGG- -5'
3135 5' -62.6 NC_001493.1 + 18218 0.66 0.607282
Target:  5'- cGGCACCCagGCcCCCGaCCGCccgggcgUGCCCa -3'
miRNA:   3'- -CCGUGGG--CGcGGGUaGGUGa------GCGGGg -5'
3135 5' -62.6 NC_001493.1 + 18600 0.67 0.54822
Target:  5'- uGGUuccuACCCGCGaggguccUCCGggaaggguUCCucaggGCUCGCCCCg -3'
miRNA:   3'- -CCG----UGGGCGC-------GGGU--------AGG-----UGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 18942 0.68 0.465773
Target:  5'- aGGCACCCGCGCgCgauggucgauaGUCCAggaagGCCCg -3'
miRNA:   3'- -CCGUGGGCGCGgG-----------UAGGUgag--CGGGg -5'
3135 5' -62.6 NC_001493.1 + 23459 0.69 0.456901
Target:  5'- cGGCAUCgagGCGCCgAUcaacaccuggaCCACaCGCCCCa -3'
miRNA:   3'- -CCGUGGg--CGCGGgUA-----------GGUGaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 23983 0.69 0.405681
Target:  5'- gGGCgaACCCGCGUUUcgguuCUCGCCCCa -3'
miRNA:   3'- -CCG--UGGGCGCGGGuagguGAGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.