miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3135 5' -62.6 NC_001493.1 + 14465 1.11 0.000486
Target:  5'- uGGCACCCGCGCCCAUCCACUCGCCCCc -3'
miRNA:   3'- -CCGUGGGCGCGGGUAGGUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 130019 1.11 0.000486
Target:  5'- uGGCACCCGCGCCCAUCCACUCGCCCCc -3'
miRNA:   3'- -CCGUGGGCGCGGGUAGGUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 31505 0.79 0.102527
Target:  5'- -cCGCCCGCGCCCA-CCuCUCGgCCCa -3'
miRNA:   3'- ccGUGGGCGCGGGUaGGuGAGCgGGG- -5'
3135 5' -62.6 NC_001493.1 + 93995 0.75 0.185297
Target:  5'- gGGUcCuuGaUGCUCAUCCGCUCGCCCg -3'
miRNA:   3'- -CCGuGggC-GCGGGUAGGUGAGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 109346 0.73 0.257324
Target:  5'- cGCGCCCGCGCUC-UCC-CggGCUCCa -3'
miRNA:   3'- cCGUGGGCGCGGGuAGGuGagCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 102390 0.73 0.269309
Target:  5'- aGgGCCCGCGCCgGUCgaaggaAC-CGCCCCc -3'
miRNA:   3'- cCgUGGGCGCGGgUAGg-----UGaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 61392 0.72 0.310681
Target:  5'- gGGUACCCGCGCUCAaauguucaugggggaUUcgauggCACUCGCCUUc -3'
miRNA:   3'- -CCGUGGGCGCGGGU---------------AG------GUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 94763 0.71 0.317566
Target:  5'- cGCACCCaccguGUuccguaaagugguguGCCCGUCCAC-CGCCCg -3'
miRNA:   3'- cCGUGGG-----CG---------------CGGGUAGGUGaGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 125515 0.71 0.328819
Target:  5'- uGCGCCCGCGCCgA---GCUCGacguCCCCg -3'
miRNA:   3'- cCGUGGGCGCGGgUaggUGAGC----GGGG- -5'
3135 5' -62.6 NC_001493.1 + 9961 0.71 0.328819
Target:  5'- uGCGCCCGCGCCgA---GCUCGacguCCCCg -3'
miRNA:   3'- cCGUGGGCGCGGgUaggUGAGC----GGGG- -5'
3135 5' -62.6 NC_001493.1 + 128648 0.69 0.404858
Target:  5'- aGCGCCCGCGCgaauaccUCAUCC--UCGUCCUc -3'
miRNA:   3'- cCGUGGGCGCG-------GGUAGGugAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 13094 0.69 0.404858
Target:  5'- aGCGCCCGCGCgaauaccUCAUCC--UCGUCCUc -3'
miRNA:   3'- cCGUGGGCGCG-------GGUAGGugAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 23983 0.69 0.405681
Target:  5'- gGGCgaACCCGCGUUUcgguuCUCGCCCCa -3'
miRNA:   3'- -CCG--UGGGCGCGGGuagguGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 29528 0.69 0.428288
Target:  5'- aGCGCCCGCGgUCAcaaaCCGCUguucacgcgcacugCGCCCUg -3'
miRNA:   3'- cCGUGGGCGCgGGUa---GGUGA--------------GCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 130504 0.69 0.439435
Target:  5'- gGGUGCCauaGCGCuCCcgCUAC-CGCUCCu -3'
miRNA:   3'- -CCGUGGg--CGCG-GGuaGGUGaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 26228 0.69 0.439435
Target:  5'- gGGCcgaaACCCGgGCCCGUCUgggUCGaCCCg -3'
miRNA:   3'- -CCG----UGGGCgCGGGUAGGug-AGCgGGG- -5'
3135 5' -62.6 NC_001493.1 + 62463 0.69 0.448121
Target:  5'- cGUGCCCGUGCCCGUggccggcucCCGCggGCUUCg -3'
miRNA:   3'- cCGUGGGCGCGGGUA---------GGUGagCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 123876 0.69 0.451622
Target:  5'- uGGCGCgCCGUGCCCgcuucgaaccguggaGgggCCGCgcgucUCGCCCg -3'
miRNA:   3'- -CCGUG-GGCGCGGG---------------Ua--GGUG-----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 8322 0.69 0.451622
Target:  5'- uGGCGCgCCGUGCCCgcuucgaaccguggaGgggCCGCgcgucUCGCCCg -3'
miRNA:   3'- -CCGUG-GGCGCGGG---------------Ua--GGUG-----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 91343 0.69 0.456901
Target:  5'- cGCACCgGC-CCCAUgucacggaCCGgaCGCCCCc -3'
miRNA:   3'- cCGUGGgCGcGGGUA--------GGUgaGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.