miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3135 5' -62.6 NC_001493.1 + 4559 0.67 0.53964
Target:  5'- cGCugCCGCGCCC--CCGggugUGCCCa -3'
miRNA:   3'- cCGugGGCGCGGGuaGGUga--GCGGGg -5'
3135 5' -62.6 NC_001493.1 + 106600 0.68 0.474734
Target:  5'- --aGCCCagguCGCCCAguuuagCCACgagUCGCCCCc -3'
miRNA:   3'- ccgUGGGc---GCGGGUa-----GGUG---AGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 29636 0.68 0.492907
Target:  5'- -cCGCCUGCGCCUugugCUGCUCGUCgCg -3'
miRNA:   3'- ccGUGGGCGCGGGua--GGUGAGCGGgG- -5'
3135 5' -62.6 NC_001493.1 + 61336 0.68 0.499344
Target:  5'- aGGCAgguuggcccggaguCCCGCGaCCCAgUCCA-UC-CCCCg -3'
miRNA:   3'- -CCGU--------------GGGCGC-GGGU-AGGUgAGcGGGG- -5'
3135 5' -62.6 NC_001493.1 + 59973 0.68 0.501189
Target:  5'- -uCAUCCGcCGCCCcaccgAUCCucgggaauauguuACUCGCCCUg -3'
miRNA:   3'- ccGUGGGC-GCGGG-----UAGG-------------UGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 3108 0.67 0.530162
Target:  5'- cGGUGCCCGguucCUCAUCCuuCUCGUCCUc -3'
miRNA:   3'- -CCGUGGGCgc--GGGUAGGu-GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 118663 0.67 0.530162
Target:  5'- cGGUGCCCGguucCUCAUCCuuCUCGUCCUc -3'
miRNA:   3'- -CCGUGGGCgc--GGGUAGGu-GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 3210 0.67 0.53964
Target:  5'- -cCACCCcgGCGCUCugGUCCAUcaugUCGCCCa -3'
miRNA:   3'- ccGUGGG--CGCGGG--UAGGUG----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 118764 0.67 0.53964
Target:  5'- -cCACCCcgGCGCUCugGUCCAUcaugUCGCCCa -3'
miRNA:   3'- ccGUGGG--CGCGGG--UAGGUG----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 14950 0.68 0.474734
Target:  5'- gGGUGCCauaGCGCUC--CCGCUCcGCUCCu -3'
miRNA:   3'- -CCGUGGg--CGCGGGuaGGUGAG-CGGGG- -5'
3135 5' -62.6 NC_001493.1 + 18942 0.68 0.465773
Target:  5'- aGGCACCCGCGCgCgauggucgauaGUCCAggaagGCCCg -3'
miRNA:   3'- -CCGUGGGCGCGgG-----------UAGGUgag--CGGGg -5'
3135 5' -62.6 NC_001493.1 + 91343 0.69 0.456901
Target:  5'- cGCACCgGC-CCCAUgucacggaCCGgaCGCCCCc -3'
miRNA:   3'- cCGUGGgCGcGGGUA--------GGUgaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 130019 1.11 0.000486
Target:  5'- uGGCACCCGCGCCCAUCCACUCGCCCCc -3'
miRNA:   3'- -CCGUGGGCGCGGGUAGGUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 102390 0.73 0.269309
Target:  5'- aGgGCCCGCGCCgGUCgaaggaAC-CGCCCCc -3'
miRNA:   3'- cCgUGGGCGCGGgUAGg-----UGaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 23983 0.69 0.405681
Target:  5'- gGGCgaACCCGCGUUUcgguuCUCGCCCCa -3'
miRNA:   3'- -CCG--UGGGCGCGGGuagguGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 26228 0.69 0.439435
Target:  5'- gGGCcgaaACCCGgGCCCGUCUgggUCGaCCCg -3'
miRNA:   3'- -CCG----UGGGCgCGGGUAGGug-AGCgGGG- -5'
3135 5' -62.6 NC_001493.1 + 130504 0.69 0.439435
Target:  5'- gGGUGCCauaGCGCuCCcgCUAC-CGCUCCu -3'
miRNA:   3'- -CCGUGGg--CGCG-GGuaGGUGaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 62463 0.69 0.448121
Target:  5'- cGUGCCCGUGCCCGUggccggcucCCGCggGCUUCg -3'
miRNA:   3'- cCGUGGGCGCGGGUA---------GGUGagCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 8322 0.69 0.451622
Target:  5'- uGGCGCgCCGUGCCCgcuucgaaccguggaGgggCCGCgcgucUCGCCCg -3'
miRNA:   3'- -CCGUG-GGCGCGGG---------------Ua--GGUG-----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 123876 0.69 0.451622
Target:  5'- uGGCGCgCCGUGCCCgcuucgaaccguggaGgggCCGCgcgucUCGCCCg -3'
miRNA:   3'- -CCGUG-GGCGCGGG---------------Ua--GGUG-----AGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.