miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31357 5' -50.4 NC_006623.1 + 56922 0.66 0.989759
Target:  5'- aUC-UAGGGcAGUGCGCGAgaaGGUAGGAa -3'
miRNA:   3'- aAGuGUCUU-UCAUGCGCUa--CCGUCUU- -5'
31357 5' -50.4 NC_006623.1 + 56346 0.66 0.988286
Target:  5'- aUCGCAGc---UugGCGAUGaGCGGGAa -3'
miRNA:   3'- aAGUGUCuuucAugCGCUAC-CGUCUU- -5'
31357 5' -50.4 NC_006623.1 + 350 0.66 0.984663
Target:  5'- --aACAGAAAGUAggggagcgauugcCGCGG-GGCAGGGg -3'
miRNA:   3'- aagUGUCUUUCAU-------------GCGCUaCCGUCUU- -5'
31357 5' -50.4 NC_006623.1 + 114815 0.67 0.982872
Target:  5'- -gCACAGGGAGUGCGCacgcGGUAGu- -3'
miRNA:   3'- aaGUGUCUUUCAUGCGcua-CCGUCuu -5'
31357 5' -50.4 NC_006623.1 + 146796 0.67 0.982872
Target:  5'- -gCACAGGGAGUGCGCacgcGGUAGu- -3'
miRNA:   3'- aaGUGUCUUUCAUGCGcua-CCGUCuu -5'
31357 5' -50.4 NC_006623.1 + 126647 0.67 0.972961
Target:  5'- aUCACAGAGGGauaagGC-CGA-GGCGGAAa -3'
miRNA:   3'- aAGUGUCUUUCa----UGcGCUaCCGUCUU- -5'
31357 5' -50.4 NC_006623.1 + 118597 0.68 0.955037
Target:  5'- cUCACAGGuAGGUGCGUuuggaggguucggGAUGGgAGAAc -3'
miRNA:   3'- aAGUGUCU-UUCAUGCG-------------CUACCgUCUU- -5'
31357 5' -50.4 NC_006623.1 + 143015 0.68 0.955037
Target:  5'- cUCACAGGuAGGUGCGUuuggaggguucggGAUGGgAGAAc -3'
miRNA:   3'- aAGUGUCU-UUCAUGCG-------------CUACCgUCUU- -5'
31357 5' -50.4 NC_006623.1 + 121718 0.69 0.951195
Target:  5'- --aGCAGAuaGAGgagACGCGG-GGCAGAAc -3'
miRNA:   3'- aagUGUCU--UUCa--UGCGCUaCCGUCUU- -5'
31357 5' -50.4 NC_006623.1 + 139894 0.69 0.951195
Target:  5'- --aGCAGAuaGAGgagACGCGG-GGCAGAAc -3'
miRNA:   3'- aagUGUCU--UUCa--UGCGCUaCCGUCUU- -5'
31357 5' -50.4 NC_006623.1 + 47165 0.69 0.941887
Target:  5'- --gGCGGAAAGU-CG-GAUGGCGGAc -3'
miRNA:   3'- aagUGUCUUUCAuGCgCUACCGUCUu -5'
31357 5' -50.4 NC_006623.1 + 2355 1.04 0.014542
Target:  5'- cUUCACAGAAAGUACGCGAUGGCAGAAg -3'
miRNA:   3'- -AAGUGUCUUUCAUGCGCUACCGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.