miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 3' -53.1 NC_001493.1 + 43674 0.69 0.890824
Target:  5'- --gAUCGCGGCACCguugguucucaacaUgugCGCGAGGGCGg -3'
miRNA:   3'- caaUGGUGCUGUGG--------------Ga--GCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 44568 0.66 0.970327
Target:  5'- --cGCCGCgGACAUCg-CGCGGgcGGACGa -3'
miRNA:   3'- caaUGGUG-CUGUGGgaGCGCU--UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 46191 0.73 0.707951
Target:  5'- --cACCGCGGCAUCCUUGgGuGAGAUGu -3'
miRNA:   3'- caaUGGUGCUGUGGGAGCgC-UUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 47344 0.66 0.963971
Target:  5'- -aUGCCcaaguccauauGCGugACCCagGCGuuGACGg -3'
miRNA:   3'- caAUGG-----------UGCugUGGGagCGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 52885 0.68 0.924348
Target:  5'- --cGCCGCGucaucucgcucaagcCACCCUCGgagucagucuCGAGGACGa -3'
miRNA:   3'- caaUGGUGCu--------------GUGGGAGC----------GCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 56716 0.71 0.786592
Target:  5'- --cAgCGCGGCACUCgUCGCGucGACGg -3'
miRNA:   3'- caaUgGUGCUGUGGG-AGCGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 57676 0.67 0.933922
Target:  5'- -aUGCCAUGAUggaggagAUgCUCgGCGAGGGCGg -3'
miRNA:   3'- caAUGGUGCUG-------UGgGAG-CGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 60370 0.67 0.934936
Target:  5'- --aGCCAcCGGCGCCCgcgagguugauaguUCGCGGcgggcuucgauuucgAGACGg -3'
miRNA:   3'- caaUGGU-GCUGUGGG--------------AGCGCU---------------UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 61997 0.66 0.967258
Target:  5'- --gGCCGCGuCAUagCC-CGUGAAGACa -3'
miRNA:   3'- caaUGGUGCuGUG--GGaGCGCUUCUGc -5'
3136 3' -53.1 NC_001493.1 + 62993 0.68 0.929235
Target:  5'- --gACCGgcacCGugACCgUCGCGAcGGCGa -3'
miRNA:   3'- caaUGGU----GCugUGGgAGCGCUuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 63141 0.66 0.963971
Target:  5'- -cUACCGCGACggugaaGCCCa--CGggGGCGa -3'
miRNA:   3'- caAUGGUGCUG------UGGGagcGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 64614 0.66 0.973185
Target:  5'- gGUUAUCAUGugGCUgUUGUGcuGACGa -3'
miRNA:   3'- -CAAUGGUGCugUGGgAGCGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 65331 0.71 0.813964
Target:  5'- --aACCGCGGCguGCCgUUCGCGcGGGCGa -3'
miRNA:   3'- caaUGGUGCUG--UGG-GAGCGCuUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 67115 0.7 0.831368
Target:  5'- --cGCUACGGCguccACCCUCuucauuuuauGUGAAGACGg -3'
miRNA:   3'- caaUGGUGCUG----UGGGAG----------CGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 67817 0.67 0.939376
Target:  5'- --gACCACGGCAUCgCUCGacgcCGAGGAg- -3'
miRNA:   3'- caaUGGUGCUGUGG-GAGC----GCUUCUgc -5'
3136 3' -53.1 NC_001493.1 + 69588 0.67 0.948531
Target:  5'- -cUGCCGCGGCcucgGCUCguUCGCGAucggGGACa -3'
miRNA:   3'- caAUGGUGCUG----UGGG--AGCGCU----UCUGc -5'
3136 3' -53.1 NC_001493.1 + 70549 0.66 0.96046
Target:  5'- --aACUcgaGCGAUAgCCUCGCGcguGACGa -3'
miRNA:   3'- caaUGG---UGCUGUgGGAGCGCuu-CUGC- -5'
3136 3' -53.1 NC_001493.1 + 79911 0.66 0.970327
Target:  5'- -cUACCACGACAuuuCCCgaauuucCGCGGGcACGu -3'
miRNA:   3'- caAUGGUGCUGU---GGGa------GCGCUUcUGC- -5'
3136 3' -53.1 NC_001493.1 + 81919 0.66 0.963971
Target:  5'- --gACCGCGugGCCaggGCGGAGAa- -3'
miRNA:   3'- caaUGGUGCugUGGgagCGCUUCUgc -5'
3136 3' -53.1 NC_001493.1 + 82319 0.69 0.883844
Target:  5'- --gGCCGCGAUcccgauaaaaaACCCUCGCaugagcuccaccugGAAGACc -3'
miRNA:   3'- caaUGGUGCUG-----------UGGGAGCG--------------CUUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.