miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 3' -53.1 NC_001493.1 + 1155 0.75 0.573045
Target:  5'- --cACCGCGGUGCCCgcuucCGCGGAGACGc -3'
miRNA:   3'- caaUGGUGCUGUGGGa----GCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 1444 0.66 0.970327
Target:  5'- uUUAUCGCGuGCACCUUUGCGAccuCGg -3'
miRNA:   3'- cAAUGGUGC-UGUGGGAGCGCUucuGC- -5'
3136 3' -53.1 NC_001493.1 + 7589 0.66 0.960096
Target:  5'- --cACCGCGGCucuCCCUgugcggucauguaCGCGggGAg- -3'
miRNA:   3'- caaUGGUGCUGu--GGGA-------------GCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 7773 0.69 0.899544
Target:  5'- --cGCCACG-CuCCuCUCGCGggGuCGg -3'
miRNA:   3'- caaUGGUGCuGuGG-GAGCGCuuCuGC- -5'
3136 3' -53.1 NC_001493.1 + 11204 0.66 0.963971
Target:  5'- ---cCCACGGgucgucgaGCCCUCGgGAuGACGg -3'
miRNA:   3'- caauGGUGCUg-------UGGGAGCgCUuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 13219 0.7 0.863853
Target:  5'- -gUGCCACGAuCACCCa---GAGGGCGa -3'
miRNA:   3'- caAUGGUGCU-GUGGGagcgCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 15046 0.66 0.963971
Target:  5'- ---uCCGgGGC-CCCUCGCGucucGACGa -3'
miRNA:   3'- caauGGUgCUGuGGGAGCGCuu--CUGC- -5'
3136 3' -53.1 NC_001493.1 + 15076 1.09 0.005279
Target:  5'- cGUUACCACGACACCCUCGCGAAGACGu -3'
miRNA:   3'- -CAAUGGUGCUGUGGGAGCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 15554 0.66 0.963971
Target:  5'- --gACCGCaggagagacgGACAgugauuUCCUCGCGggGGCu -3'
miRNA:   3'- caaUGGUG----------CUGU------GGGAGCGCuuCUGc -5'
3136 3' -53.1 NC_001493.1 + 16250 0.68 0.923792
Target:  5'- -cUACCGCGAUGCCUguUCGCGcuGAa- -3'
miRNA:   3'- caAUGGUGCUGUGGG--AGCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 17580 0.67 0.93443
Target:  5'- -gUGCC-CG-CACCCUgGCGcgcguGGACGa -3'
miRNA:   3'- caAUGGuGCuGUGGGAgCGCu----UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 19596 0.66 0.966939
Target:  5'- -gUGCCGCGGgagcgUACCCUcCGCGAaauaccgGGGCc -3'
miRNA:   3'- caAUGGUGCU-----GUGGGA-GCGCU-------UCUGc -5'
3136 3' -53.1 NC_001493.1 + 24658 0.68 0.91216
Target:  5'- --cGCCuggggauCGAgGCCCUCGUGAGGuuuacGCGg -3'
miRNA:   3'- caaUGGu------GCUgUGGGAGCGCUUC-----UGC- -5'
3136 3' -53.1 NC_001493.1 + 26473 0.66 0.970327
Target:  5'- --cACCggugaaacagagACGACugCC-CGCGAggaAGACGa -3'
miRNA:   3'- caaUGG------------UGCUGugGGaGCGCU---UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 27968 0.69 0.87882
Target:  5'- -gUGCCggacucgaACGGCACCC--GCGGAGAUGg -3'
miRNA:   3'- caAUGG--------UGCUGUGGGagCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 28264 0.66 0.972908
Target:  5'- -aUAUCACGGCGgauuacaacggucUgCUCGCGGAGuACGa -3'
miRNA:   3'- caAUGGUGCUGU-------------GgGAGCGCUUC-UGC- -5'
3136 3' -53.1 NC_001493.1 + 32313 0.66 0.970327
Target:  5'- ---cCCGCGAguugACgCUCGCGAAGAgGg -3'
miRNA:   3'- caauGGUGCUg---UGgGAGCGCUUCUgC- -5'
3136 3' -53.1 NC_001493.1 + 36215 0.67 0.956719
Target:  5'- -gUACCGgGGCGgCCUgCGCGggGGu- -3'
miRNA:   3'- caAUGGUgCUGUgGGA-GCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 37250 0.67 0.941286
Target:  5'- --gACCACGACGCugcacuccaguaucaCCUCGUuGAGGCc -3'
miRNA:   3'- caaUGGUGCUGUG---------------GGAGCGcUUCUGc -5'
3136 3' -53.1 NC_001493.1 + 43272 0.68 0.905974
Target:  5'- aUUAUCAUGGCGCCC-CGUGGucguguacugcaGGGCGu -3'
miRNA:   3'- cAAUGGUGCUGUGGGaGCGCU------------UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.