Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3136 | 3' | -53.1 | NC_001493.1 | + | 15076 | 1.09 | 0.005279 |
Target: 5'- cGUUACCACGACACCCUCGCGAAGACGu -3' miRNA: 3'- -CAAUGGUGCUGUGGGAGCGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 130631 | 1.09 | 0.005279 |
Target: 5'- cGUUACCACGACACCCUCGCGAAGACGu -3' miRNA: 3'- -CAAUGGUGCUGUGGGAGCGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 1155 | 0.75 | 0.573045 |
Target: 5'- --cACCGCGGUGCCCgcuucCGCGGAGACGc -3' miRNA: 3'- caaUGGUGCUGUGGGa----GCGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 116710 | 0.75 | 0.573045 |
Target: 5'- --cACCGCGGUGCCCgcuucCGCGGAGACGc -3' miRNA: 3'- caaUGGUGCUGUGGGa----GCGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 106619 | 0.75 | 0.593748 |
Target: 5'- --aGCCACGAguCGCCCccgguUCGUGAAGAUGa -3' miRNA: 3'- caaUGGUGCU--GUGGG-----AGCGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 46191 | 0.73 | 0.707951 |
Target: 5'- --cACCGCGGCAUCCUUGgGuGAGAUGu -3' miRNA: 3'- caaUGGUGCUGUGGGAGCgC-UUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 56716 | 0.71 | 0.786592 |
Target: 5'- --cAgCGCGGCACUCgUCGCGucGACGg -3' miRNA: 3'- caaUgGUGCUGUGGG-AGCGCuuCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 65331 | 0.71 | 0.813964 |
Target: 5'- --aACCGCGGCguGCCgUUCGCGcGGGCGa -3' miRNA: 3'- caaUGGUGCUG--UGG-GAGCGCuUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 90375 | 0.7 | 0.831368 |
Target: 5'- ---cCCGCGAaccCCCUCGUGAgAGACGc -3' miRNA: 3'- caauGGUGCUgu-GGGAGCGCU-UCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 67115 | 0.7 | 0.831368 |
Target: 5'- --cGCUACGGCguccACCCUCuucauuuuauGUGAAGACGg -3' miRNA: 3'- caaUGGUGCUG----UGGGAG----------CGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 128773 | 0.7 | 0.863853 |
Target: 5'- -gUGCCACGAuCACCCa---GAGGGCGa -3' miRNA: 3'- caAUGGUGCU-GUGGGagcgCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 13219 | 0.7 | 0.863853 |
Target: 5'- -gUGCCACGAuCACCCa---GAGGGCGa -3' miRNA: 3'- caAUGGUGCU-GUGGGagcgCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 114138 | 0.69 | 0.878093 |
Target: 5'- cGggACCAUcugggagGACGCgCCaaUCGCGggGACGu -3' miRNA: 3'- -CaaUGGUG-------CUGUG-GG--AGCGCuuCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 27968 | 0.69 | 0.87882 |
Target: 5'- -gUGCCggacucgaACGGCACCC--GCGGAGAUGg -3' miRNA: 3'- caAUGG--------UGCUGUGGGagCGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 82319 | 0.69 | 0.883844 |
Target: 5'- --gGCCGCGAUcccgauaaaaaACCCUCGCaugagcuccaccugGAAGACc -3' miRNA: 3'- caaUGGUGCUG-----------UGGGAGCG--------------CUUCUGc -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 43674 | 0.69 | 0.890824 |
Target: 5'- --gAUCGCGGCACCguugguucucaacaUgugCGCGAGGGCGg -3' miRNA: 3'- caaUGGUGCUGUGG--------------Ga--GCGCUUCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 123327 | 0.69 | 0.899544 |
Target: 5'- --cGCCACG-CuCCuCUCGCGggGuCGg -3' miRNA: 3'- caaUGGUGCuGuGG-GAGCGCuuCuGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 7773 | 0.69 | 0.899544 |
Target: 5'- --cGCCACG-CuCCuCUCGCGggGuCGg -3' miRNA: 3'- caaUGGUGCuGuGG-GAGCGCuuCuGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 43272 | 0.68 | 0.905974 |
Target: 5'- aUUAUCAUGGCGCCC-CGUGGucguguacugcaGGGCGu -3' miRNA: 3'- cAAUGGUGCUGUGGGaGCGCU------------UCUGC- -5' |
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3136 | 3' | -53.1 | NC_001493.1 | + | 24658 | 0.68 | 0.91216 |
Target: 5'- --cGCCuggggauCGAgGCCCUCGUGAGGuuuacGCGg -3' miRNA: 3'- caaUGGu------GCUgUGGGAGCGCUUC-----UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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