miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 3' -53.1 NC_001493.1 + 7589 0.66 0.960096
Target:  5'- --cACCGCGGCucuCCCUgugcggucauguaCGCGggGAg- -3'
miRNA:   3'- caaUGGUGCUGu--GGGA-------------GCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 131804 0.68 0.923792
Target:  5'- -cUACCGCGAUGCCUguUCGCGcuGAa- -3'
miRNA:   3'- caAUGGUGCUGUGGG--AGCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 52885 0.68 0.924348
Target:  5'- --cGCCGCGucaucucgcucaagcCACCCUCGgagucagucuCGAGGACGa -3'
miRNA:   3'- caaUGGUGCu--------------GUGGGAGC----------GCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 97493 0.67 0.93443
Target:  5'- --aGCCAaguCGuggguCACCCgCGUGGAGACGa -3'
miRNA:   3'- caaUGGU---GCu----GUGGGaGCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 67817 0.67 0.939376
Target:  5'- --gACCACGGCAUCgCUCGacgcCGAGGAg- -3'
miRNA:   3'- caaUGGUGCUGUGG-GAGC----GCUUCUgc -5'
3136 3' -53.1 NC_001493.1 + 37250 0.67 0.941286
Target:  5'- --gACCACGACGCugcacuccaguaucaCCUCGUuGAGGCc -3'
miRNA:   3'- caaUGGUGCUGUG---------------GGAGCGcUUCUGc -5'
3136 3' -53.1 NC_001493.1 + 69588 0.67 0.948531
Target:  5'- -cUGCCGCGGCcucgGCUCguUCGCGAucggGGACa -3'
miRNA:   3'- caAUGGUGCUG----UGGG--AGCGCU----UCUGc -5'
3136 3' -53.1 NC_001493.1 + 91899 0.67 0.952744
Target:  5'- aUUACUGCGACACUUUgGUGGgcugacAGACGu -3'
miRNA:   3'- cAAUGGUGCUGUGGGAgCGCU------UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 36215 0.67 0.956719
Target:  5'- -gUACCGgGGCGgCCUgCGCGggGGu- -3'
miRNA:   3'- caAUGGUgCUGUgGGA-GCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 16250 0.68 0.923792
Target:  5'- -cUACCGCGAUGCCUguUCGCGcuGAa- -3'
miRNA:   3'- caAUGGUGCUGUGGG--AGCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 43272 0.68 0.905974
Target:  5'- aUUAUCAUGGCGCCC-CGUGGucguguacugcaGGGCGu -3'
miRNA:   3'- cAAUGGUGCUGUGGGaGCGCU------------UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 123327 0.69 0.899544
Target:  5'- --cGCCACG-CuCCuCUCGCGggGuCGg -3'
miRNA:   3'- caaUGGUGCuGuGG-GAGCGCuuCuGC- -5'
3136 3' -53.1 NC_001493.1 + 130631 1.09 0.005279
Target:  5'- cGUUACCACGACACCCUCGCGAAGACGu -3'
miRNA:   3'- -CAAUGGUGCUGUGGGAGCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 1155 0.75 0.573045
Target:  5'- --cACCGCGGUGCCCgcuucCGCGGAGACGc -3'
miRNA:   3'- caaUGGUGCUGUGGGa----GCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 116710 0.75 0.573045
Target:  5'- --cACCGCGGUGCCCgcuucCGCGGAGACGc -3'
miRNA:   3'- caaUGGUGCUGUGGGa----GCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 106619 0.75 0.593748
Target:  5'- --aGCCACGAguCGCCCccgguUCGUGAAGAUGa -3'
miRNA:   3'- caaUGGUGCU--GUGGG-----AGCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 67115 0.7 0.831368
Target:  5'- --cGCUACGGCguccACCCUCuucauuuuauGUGAAGACGg -3'
miRNA:   3'- caaUGGUGCUG----UGGGAG----------CGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 114138 0.69 0.878093
Target:  5'- cGggACCAUcugggagGACGCgCCaaUCGCGggGACGu -3'
miRNA:   3'- -CaaUGGUG-------CUGUG-GG--AGCGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 43674 0.69 0.890824
Target:  5'- --gAUCGCGGCACCguugguucucaacaUgugCGCGAGGGCGg -3'
miRNA:   3'- caaUGGUGCUGUGG--------------Ga--GCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 7773 0.69 0.899544
Target:  5'- --cGCCACG-CuCCuCUCGCGggGuCGg -3'
miRNA:   3'- caaUGGUGCuGuGG-GAGCGCuuCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.