miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31361 5' -59.8 NC_006623.1 + 23843 0.66 0.765279
Target:  5'- -uGGCGcauuUGCCGCCAUCauCCGCCc -3'
miRNA:   3'- cuCCGCucu-AUGGUGGUGGgcGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 1753 0.66 0.759732
Target:  5'- -cGGCGGGAgcgggcaguacggcuUucccgcaacGCCACUACCUGCCaGUCa -3'
miRNA:   3'- cuCCGCUCU---------------A---------UGGUGGUGGGCGG-CGG- -5'
31361 5' -59.8 NC_006623.1 + 148417 0.66 0.756012
Target:  5'- cAGGCauuc--CCACCGCgcgcaaCCGCCGCCg -3'
miRNA:   3'- cUCCGcucuauGGUGGUG------GGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 24009 0.66 0.756012
Target:  5'- uGAGGCGG---ACCACC-CCCGgC-CCg -3'
miRNA:   3'- -CUCCGCUcuaUGGUGGuGGGCgGcGG- -5'
31361 5' -59.8 NC_006623.1 + 113195 0.66 0.756012
Target:  5'- cAGGCauuc--CCACCGCgcgcaaCCGCCGCCg -3'
miRNA:   3'- cUCCGcucuauGGUGGUG------GGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 121836 0.66 0.753211
Target:  5'- aGAaGCGGacgcgcgccccuuuGcgACCGCCGgacauCCCGCCGCCc -3'
miRNA:   3'- -CUcCGCU--------------CuaUGGUGGU-----GGGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 139775 0.66 0.753211
Target:  5'- aGAaGCGGacgcgcgccccuuuGcgACCGCCGgacauCCCGCCGCCc -3'
miRNA:   3'- -CUcCGCU--------------CuaUGGUGGU-----GGGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 137260 0.66 0.746641
Target:  5'- aGGGCGuGu--CUuCCGCUCGCCGCg -3'
miRNA:   3'- cUCCGCuCuauGGuGGUGGGCGGCGg -5'
31361 5' -59.8 NC_006623.1 + 116495 0.67 0.702439
Target:  5'- -uGGCGGGAgauucuuggGCgGCCGaaggcucugcuccguCgCCGCCGCCa -3'
miRNA:   3'- cuCCGCUCUa--------UGgUGGU---------------G-GGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 145117 0.67 0.702439
Target:  5'- -uGGCGGGAgauucuuggGCgGCCGaaggcucugcuccguCgCCGCCGCCa -3'
miRNA:   3'- cuCCGCUCUa--------UGgUGGU---------------G-GGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 112125 0.67 0.668958
Target:  5'- gGGGuuGCGAGAUACUugACgGCCCGacaucaaaCGCCa -3'
miRNA:   3'- -CUC--CGCUCUAUGG--UGgUGGGCg-------GCGG- -5'
31361 5' -59.8 NC_006623.1 + 64904 0.68 0.649091
Target:  5'- uGGGGCGuucgccGGAcuugGCCGCUACCgGUgGCCc -3'
miRNA:   3'- -CUCCGC------UCUa---UGGUGGUGGgCGgCGG- -5'
31361 5' -59.8 NC_006623.1 + 122205 0.68 0.639134
Target:  5'- --aGCGAGAgACCGCCGCaacgcgcugaUUGCUGCCa -3'
miRNA:   3'- cucCGCUCUaUGGUGGUG----------GGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 139407 0.68 0.639134
Target:  5'- --aGCGAGAgACCGCCGCaacgcgcugaUUGCUGCCa -3'
miRNA:   3'- cucCGCUCUaUGGUGGUG----------GGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 138854 0.69 0.599326
Target:  5'- -cGGcCGAgGGUGCCACaagcagcaccagUGCCCgGCCGCCa -3'
miRNA:   3'- cuCC-GCU-CUAUGGUG------------GUGGG-CGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 122757 0.69 0.589414
Target:  5'- -cGGcCGAgGGUGCCACaacagcaccagUGCCCgGCCGCCa -3'
miRNA:   3'- cuCC-GCU-CUAUGGUG-----------GUGGG-CGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 135575 0.69 0.569686
Target:  5'- cGAGGUgGAGAUAgaCACCAUCaaGCCGUCa -3'
miRNA:   3'- -CUCCG-CUCUAUg-GUGGUGGg-CGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 116590 0.7 0.540419
Target:  5'- gGAGGUaGGucGUACCGgcaagucguCCGCCgGCCGCCu -3'
miRNA:   3'- -CUCCGcUC--UAUGGU---------GGUGGgCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 109578 0.7 0.540419
Target:  5'- -cGGUaauaGGGGUACCG--GCCUGCCGCCu -3'
miRNA:   3'- cuCCG----CUCUAUGGUggUGGGCGGCGG- -5'
31361 5' -59.8 NC_006623.1 + 145022 0.7 0.540419
Target:  5'- gGAGGUaGGucGUACCGgcaagucguCCGCCgGCCGCCu -3'
miRNA:   3'- -CUCCGcUC--UAUGGU---------GGUGGgCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.