Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 114855 | 0.66 | 0.688636 |
Target: 5'- cGCGGucccgaauCGGgagGCGCUggcGGCCGCGccgcuuuccaccuccGGCGCg -3' miRNA: 3'- -CGCU--------GCCg--CGCGAa--UCGGCGC---------------CCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 137284 | 0.67 | 0.60662 |
Target: 5'- uCGGCGGC-CGCUgccggaauagUGGCC-UGGGcCGCg -3' miRNA: 3'- cGCUGCCGcGCGA----------AUCGGcGCCC-GCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 139580 | 0.66 | 0.635982 |
Target: 5'- gGgGGCGGCGgGauguccggcGGUCGCaaagGGGCGCg -3' miRNA: 3'- -CgCUGCCGCgCgaa------UCGGCG----CCCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 122771 | 0.66 | 0.645773 |
Target: 5'- uGCGAgGGacgcuggaauCGCGCUggcGCUgGCGcGGCGCc -3' miRNA: 3'- -CGCUgCC----------GCGCGAau-CGG-CGC-CCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 144921 | 0.66 | 0.645773 |
Target: 5'- gGCGGCGGCGacggaGCagAGCCuuCGGcCGCc -3' miRNA: 3'- -CGCUGCCGCg----CGaaUCGGc-GCCcGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 2131 | 0.66 | 0.655554 |
Target: 5'- uCGACGGCGgGCUUcccAGCgGCcGGUa- -3' miRNA: 3'- cGCUGCCGCgCGAA---UCGgCGcCCGcg -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 139302 | 0.66 | 0.655554 |
Target: 5'- uCGACuaacuCGCGCcagAGCCGCGaGGCGa -3' miRNA: 3'- cGCUGcc---GCGCGaa-UCGGCGC-CCGCg -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 113015 | 0.66 | 0.655554 |
Target: 5'- cGCGGCGGCGguUGCgc-GCgGUGGGaauGCc -3' miRNA: 3'- -CGCUGCCGC--GCGaauCGgCGCCCg--CG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 76796 | 0.66 | 0.675057 |
Target: 5'- uUGugGGUGgGUUacUAGuuGCuugcuuGGGCGCa -3' miRNA: 3'- cGCugCCGCgCGA--AUCggCG------CCCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 128283 | 0.67 | 0.60369 |
Target: 5'- cGCGACGcuuaaccucaguucGCGCGC----CCGUaccGGGCGCa -3' miRNA: 3'- -CGCUGC--------------CGCGCGaaucGGCG---CCCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 121994 | 0.68 | 0.567743 |
Target: 5'- uCGACGG-GUGCUac-CCGCuGGCGCu -3' miRNA: 3'- cGCUGCCgCGCGAaucGGCGcCCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 122277 | 0.68 | 0.52011 |
Target: 5'- gGCGACGcGCGgccuagGUUUgaGGCCGCGGuGgGCg -3' miRNA: 3'- -CGCUGC-CGCg-----CGAA--UCGGCGCC-CgCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 144656 | 0.77 | 0.163954 |
Target: 5'- cCGugGGCGUGCUUGGCUGCuccgacgaGGGUGa -3' miRNA: 3'- cGCugCCGCGCGAAUCGGCG--------CCCGCg -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 138731 | 0.72 | 0.32834 |
Target: 5'- cGCGcCGGCGCGCaaGGCggccagguauuCGCGacGGCGCa -3' miRNA: 3'- -CGCuGCCGCGCGaaUCG-----------GCGC--CCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 146797 | 0.7 | 0.421787 |
Target: 5'- ---cCGGaUGCGCcagGGgCGCGGGCGCg -3' miRNA: 3'- cgcuGCC-GCGCGaa-UCgGCGCCCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 115385 | 0.7 | 0.456306 |
Target: 5'- uGCGACGGgGgGC-UAGUC-CGGGCa- -3' miRNA: 3'- -CGCUGCCgCgCGaAUCGGcGCCCGcg -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 124181 | 0.69 | 0.484075 |
Target: 5'- cGCGGCGaGCGuCGCcgcuaacgucggcGCCGCGGGgaGCg -3' miRNA: 3'- -CGCUGC-CGC-GCGaau----------CGGCGCCCg-CG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 45831 | 0.69 | 0.501489 |
Target: 5'- uCGA-GGCGCGCUc-GCCGgGcuccGGCGCa -3' miRNA: 3'- cGCUgCCGCGCGAauCGGCgC----CCGCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 123465 | 0.69 | 0.510765 |
Target: 5'- gGCGGcCGGCGCGCUgcucUGGUuauuccagugCGCGGacCGCg -3' miRNA: 3'- -CGCU-GCCGCGCGA----AUCG----------GCGCCc-GCG- -5' |
|||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 111 | 0.68 | 0.52011 |
Target: 5'- uCGAaaUGGCGCGUUUGGCCcccugccagcGCGGcccugcguucguGCGCa -3' miRNA: 3'- cGCU--GCCGCGCGAAUCGG----------CGCC------------CGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home