Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 111 | 0.68 | 0.52011 |
Target: 5'- uCGAaaUGGCGCGUUUGGCCcccugccagcGCGGcccugcguucguGCGCa -3' miRNA: 3'- cGCU--GCCGCGCGAAUCGG----------CGCC------------CGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 491 | 0.67 | 0.626188 |
Target: 5'- uGUGGCugcuGUGCGCU--GCCGCGcuuuuaauGGCGCu -3' miRNA: 3'- -CGCUGc---CGCGCGAauCGGCGC--------CCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 2131 | 0.66 | 0.655554 |
Target: 5'- uCGACGGCGgGCUUcccAGCgGCcGGUa- -3' miRNA: 3'- cGCUGCCGCgCGAA---UCGgCGcCCGcg -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 45831 | 0.69 | 0.501489 |
Target: 5'- uCGA-GGCGCGCUc-GCCGgGcuccGGCGCa -3' miRNA: 3'- cGCUgCCGCGCGAauCGGCgC----CCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 46013 | 0.67 | 0.60662 |
Target: 5'- aUGGgGGUGCGCcggAGCCcgGCGaGCGCg -3' miRNA: 3'- cGCUgCCGCGCGaa-UCGG--CGCcCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 76796 | 0.66 | 0.675057 |
Target: 5'- uUGugGGUGgGUUacUAGuuGCuugcuuGGGCGCa -3' miRNA: 3'- cGCugCCGCgCGA--AUCggCG------CCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 106400 | 0.67 | 0.626188 |
Target: 5'- --aAUGGCGUGUUgacuuaCGUGGGCGCg -3' miRNA: 3'- cgcUGCCGCGCGAaucg--GCGCCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 108979 | 0.66 | 0.684764 |
Target: 5'- uCGugGGUGCGacgGGUCGUGcGGCa- -3' miRNA: 3'- cGCugCCGCGCgaaUCGGCGC-CCGcg -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 110373 | 0.68 | 0.533306 |
Target: 5'- cCGACGGaccCGCGCguauuuuuaauucgUGuCCGCaGGGCGCg -3' miRNA: 3'- cGCUGCC---GCGCGa-------------AUcGGCG-CCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 110973 | 0.68 | 0.567743 |
Target: 5'- uGUGAgGGUGCGaccugUAGCUcCGGaGCGCu -3' miRNA: 3'- -CGCUgCCGCGCga---AUCGGcGCC-CGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 113015 | 0.66 | 0.655554 |
Target: 5'- cGCGGCGGCGguUGCgc-GCgGUGGGaauGCc -3' miRNA: 3'- -CGCUGCCGC--GCGaauCGgCGCCCg--CG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 114814 | 0.7 | 0.421787 |
Target: 5'- ---cCGGaUGCGCcagGGgCGCGGGCGCg -3' miRNA: 3'- cgcuGCC-GCGCGaa-UCgGCGCCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 114855 | 0.66 | 0.688636 |
Target: 5'- cGCGGucccgaauCGGgagGCGCUggcGGCCGCGccgcuuuccaccuccGGCGCg -3' miRNA: 3'- -CGCU--------GCCg--CGCGAa--UCGGCGC---------------CCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 115385 | 0.7 | 0.456306 |
Target: 5'- uGCGACGGgGgGC-UAGUC-CGGGCa- -3' miRNA: 3'- -CGCUGCCgCgCGaAUCGGcGCCCGcg -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 116691 | 0.66 | 0.645773 |
Target: 5'- gGCGGCGGCGacggaGCagAGCCuuCGGcCGCc -3' miRNA: 3'- -CGCUGCCGCg----CGaaUCGGc-GCCcGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 116956 | 0.77 | 0.163954 |
Target: 5'- cCGugGGCGUGCUUGGCUGCuccgacgaGGGUGa -3' miRNA: 3'- cGCugCCGCGCGAAUCGGCG--------CCCGCg -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 121994 | 0.68 | 0.567743 |
Target: 5'- uCGACGG-GUGCUac-CCGCuGGCGCu -3' miRNA: 3'- cGCUGCCgCGCGAaucGGCGcCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 122032 | 0.66 | 0.635982 |
Target: 5'- gGgGGCGGCGgGauguccggcGGUCGCaaagGGGCGCg -3' miRNA: 3'- -CgCUGCCGCgCgaa------UCGGCG----CCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 122277 | 0.68 | 0.52011 |
Target: 5'- gGCGACGcGCGgccuagGUUUgaGGCCGCGGuGgGCg -3' miRNA: 3'- -CGCUGC-CGCg-----CGAA--UCGGCGCC-CgCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 122310 | 0.66 | 0.655554 |
Target: 5'- uCGACuaacuCGCGCcagAGCCGCGaGGCGa -3' miRNA: 3'- cGCUGcc---GCGCGaa-UCGGCGC-CCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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