miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31378 5' -61.8 NC_006623.1 + 148597 0.66 0.655554
Target:  5'- cGCGGCGGCGguUGCgc-GCgGUGGGaauGCc -3'
miRNA:   3'- -CGCUGCCGC--GCGaauCGgCGCCCg--CG- -5'
31378 5' -61.8 NC_006623.1 + 146797 0.7 0.421787
Target:  5'- ---cCGGaUGCGCcagGGgCGCGGGCGCg -3'
miRNA:   3'- cgcuGCC-GCGCGaa-UCgGCGCCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 146756 0.66 0.688636
Target:  5'- cGCGGucccgaauCGGgagGCGCUggcGGCCGCGccgcuuuccaccuccGGCGCg -3'
miRNA:   3'- -CGCU--------GCCg--CGCGAa--UCGGCGC---------------CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 146227 0.7 0.456306
Target:  5'- uGCGACGGgGgGC-UAGUC-CGGGCa- -3'
miRNA:   3'- -CGCUGCCgCgCGaAUCGGcGCCCGcg -5'
31378 5' -61.8 NC_006623.1 + 144921 0.66 0.645773
Target:  5'- gGCGGCGGCGacggaGCagAGCCuuCGGcCGCc -3'
miRNA:   3'- -CGCUGCCGCg----CGaaUCGGc-GCCcGCG- -5'
31378 5' -61.8 NC_006623.1 + 144656 0.77 0.163954
Target:  5'- cCGugGGCGUGCUUGGCUGCuccgacgaGGGUGa -3'
miRNA:   3'- cGCugCCGCGCGAAUCGGCG--------CCCGCg -5'
31378 5' -61.8 NC_006623.1 + 139618 0.68 0.567743
Target:  5'- uCGACGG-GUGCUac-CCGCuGGCGCu -3'
miRNA:   3'- cGCUGCCgCGCGAaucGGCGcCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 139580 0.66 0.635982
Target:  5'- gGgGGCGGCGgGauguccggcGGUCGCaaagGGGCGCg -3'
miRNA:   3'- -CgCUGCCGCgCgaa------UCGGCG----CCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 139335 0.68 0.52011
Target:  5'- gGCGACGcGCGgccuagGUUUgaGGCCGCGGuGgGCg -3'
miRNA:   3'- -CGCUGC-CGCg-----CGAA--UCGGCGCC-CgCG- -5'
31378 5' -61.8 NC_006623.1 + 139302 0.66 0.655554
Target:  5'- uCGACuaacuCGCGCcagAGCCGCGaGGCGa -3'
miRNA:   3'- cGCUGcc---GCGCGaa-UCGGCGC-CCGCg -5'
31378 5' -61.8 NC_006623.1 + 138840 0.66 0.645773
Target:  5'- uGCGAgGGacgcuggaauCGCGCUggcGCUgGCGcGGCGCc -3'
miRNA:   3'- -CGCUgCC----------GCGCGAau-CGG-CGC-CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 138731 0.72 0.32834
Target:  5'- cGCGcCGGCGCGCaaGGCggccagguauuCGCGacGGCGCa -3'
miRNA:   3'- -CGCuGCCGCGCGaaUCG-----------GCGC--CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 138147 0.69 0.510765
Target:  5'- gGCGGcCGGCGCGCUgcucUGGUuauuccagugCGCGGacCGCg -3'
miRNA:   3'- -CGCU-GCCGCGCGA----AUCG----------GCGCCc-GCG- -5'
31378 5' -61.8 NC_006623.1 + 137886 1.12 0.000585
Target:  5'- uGCGACGGCGCGCUUAGCCGCGGGCGCu -3'
miRNA:   3'- -CGCUGCCGCGCGAAUCGGCGCCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 137284 0.67 0.60662
Target:  5'- uCGGCGGC-CGCUgccggaauagUGGCC-UGGGcCGCg -3'
miRNA:   3'- cGCUGCCGcGCGA----------AUCGGcGCCC-GCG- -5'
31378 5' -61.8 NC_006623.1 + 129943 0.68 0.566778
Target:  5'- aGCuGACGGCGC-CUUcaGGCgGCGGauaugucGCGUg -3'
miRNA:   3'- -CG-CUGCCGCGcGAA--UCGgCGCC-------CGCG- -5'
31378 5' -61.8 NC_006623.1 + 128486 0.72 0.342802
Target:  5'- cGCGgaaACGGCGC-CUgcGCCcgguaCGGGCGCg -3'
miRNA:   3'- -CGC---UGCCGCGcGAauCGGc----GCCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 128283 0.67 0.60369
Target:  5'- cGCGACGcuuaaccucaguucGCGCGC----CCGUaccGGGCGCa -3'
miRNA:   3'- -CGCUGC--------------CGCGCGaaucGGCG---CCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 124359 0.68 0.558112
Target:  5'- gGCGccgacguuaGCGGCGaCGCUc-GCCGCGucGGCGg -3'
miRNA:   3'- -CGC---------UGCCGC-GCGAauCGGCGC--CCGCg -5'
31378 5' -61.8 NC_006623.1 + 124181 0.69 0.484075
Target:  5'- cGCGGCGaGCGuCGCcgcuaacgucggcGCCGCGGGgaGCg -3'
miRNA:   3'- -CGCUGC-CGC-GCGaau----------CGGCGCCCg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.