Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31389 | 3' | -50.5 | NC_006623.1 | + | 59667 | 0.7 | 0.938681 |
Target: 5'- cUGGAGuCUGAAGCUUAUcAACGGGCAa -3' miRNA: 3'- -ACUUC-GGCUUUGGGUGuUUGCUCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 46004 | 0.78 | 0.559516 |
Target: 5'- ---cGCCGGAGCCCG---GCGAGCGCg -3' miRNA: 3'- acuuCGGCUUUGGGUguuUGCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 123700 | 0.68 | 0.975921 |
Target: 5'- cGAGcuGCCGGugcucuauaucagAGCCCGgGGAgGGGCGCa -3' miRNA: 3'- aCUU--CGGCU-------------UUGGGUgUUUgCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 1952 | 0.68 | 0.970259 |
Target: 5'- aGcAAGUgCGAccuAGCCCGCAggcaucuaugcauAACGAGCACu -3' miRNA: 3'- aC-UUCG-GCU---UUGGGUGU-------------UUGCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 3062 | 0.7 | 0.92252 |
Target: 5'- aUGGAGCCGAa--CUGCAGGCGAcGCGa -3' miRNA: 3'- -ACUUCGGCUuugGGUGUUUGCU-CGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 12328 | 0.67 | 0.980972 |
Target: 5'- cUGAGGUCaGAAuCCCGCc-ACGaAGCACa -3' miRNA: 3'- -ACUUCGG-CUUuGGGUGuuUGC-UCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 117289 | 0.68 | 0.97348 |
Target: 5'- gGGAGCUGGAAgCCGCAGcgaaaGAGcCACc -3' miRNA: 3'- aCUUCGGCUUUgGGUGUUug---CUC-GUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 27165 | 0.66 | 0.994208 |
Target: 5'- gGAAuuGCCGuggguuuucacGGCCCGCcgaccuuGACGGGCACu -3' miRNA: 3'- aCUU--CGGCu----------UUGGGUGu------UUGCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 8630 | 0.73 | 0.843647 |
Target: 5'- aGAAGCC--AACCCAUAuGCGGGCcCa -3' miRNA: 3'- aCUUCGGcuUUGGGUGUuUGCUCGuG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 137912 | 0.68 | 0.975921 |
Target: 5'- cGAGcuGCCGGugcucuauaucagAGCCCGgGGAgGGGCGCa -3' miRNA: 3'- aCUU--CGGCU-------------UUGGGUgUUUgCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 134528 | 0.68 | 0.97348 |
Target: 5'- cGAA-CCGAcACCCGCAAACGAa--- -3' miRNA: 3'- aCUUcGGCUuUGGGUGUUUGCUcgug -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 141768 | 0.66 | 0.989786 |
Target: 5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3' miRNA: 3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 136585 | 0.71 | 0.897309 |
Target: 5'- aGggGCCGAAGa-CGCGGccGCGGGCAa -3' miRNA: 3'- aCuuCGGCUUUggGUGUU--UGCUCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 133465 | 0.66 | 0.992245 |
Target: 5'- cGAAGacgaCGAAGuCCC-CGAGgacacCGAGCACg -3' miRNA: 3'- aCUUCg---GCUUU-GGGuGUUU-----GCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 111670 | 0.66 | 0.992245 |
Target: 5'- -cGGGCCGcuGCCauuucaACGAACGGGCcCg -3' miRNA: 3'- acUUCGGCuuUGGg-----UGUUUGCUCGuG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 87078 | 0.66 | 0.993284 |
Target: 5'- uUGAGGgCGGuGGCCCAaggguUGAGCGCu -3' miRNA: 3'- -ACUUCgGCU-UUGGGUguuu-GCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 129261 | 0.71 | 0.897309 |
Target: 5'- aGGAGCagGAAAacgCCACGGACGAGCu- -3' miRNA: 3'- aCUUCGg-CUUUg--GGUGUUUGCUCGug -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 140873 | 0.66 | 0.993284 |
Target: 5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3' miRNA: 3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 54252 | 0.68 | 0.97348 |
Target: 5'- -uGAGUCGAAGCCauCACGuucuauuuuCGAGCGCg -3' miRNA: 3'- acUUCGGCUUUGG--GUGUuu-------GCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 116875 | 0.66 | 0.994208 |
Target: 5'- cGAGGCgacuccauagCGAAGCCgCGCAGuACGgcauGGCGCg -3' miRNA: 3'- aCUUCG----------GCUUUGG-GUGUU-UGC----UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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