miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 129261 0.71 0.897309
Target:  5'- aGGAGCagGAAAacgCCACGGACGAGCu- -3'
miRNA:   3'- aCUUCGg-CUUUg--GGUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 136585 0.71 0.897309
Target:  5'- aGggGCCGAAGa-CGCGGccGCGGGCAa -3'
miRNA:   3'- aCuuCGGCUUUggGUGUU--UGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 52485 0.7 0.92252
Target:  5'- gGAAGuuGAAAUCUGCAGACGcGC-Ca -3'
miRNA:   3'- aCUUCggCUUUGGGUGUUUGCuCGuG- -5'
31389 3' -50.5 NC_006623.1 + 126665 0.7 0.92817
Target:  5'- cGAGGCgGAAAUCUAUugGAGCGuuuAGCGCg -3'
miRNA:   3'- aCUUCGgCUUUGGGUG--UUUGC---UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131563 0.7 0.933557
Target:  5'- -aGAGCCGGaaauuacucaGACCC-CGAGCGcGGCACc -3'
miRNA:   3'- acUUCGGCU----------UUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 136338 0.69 0.964052
Target:  5'- uUGAGGCCGGcgGGCUUACGGACGAu--- -3'
miRNA:   3'- -ACUUCGGCU--UUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 144323 0.68 0.97348
Target:  5'- gGGAGCUGGAAgCCGCAGcgaaaGAGcCACc -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUUug---CUC-GUG- -5'
31389 3' -50.5 NC_006623.1 + 54252 0.68 0.97348
Target:  5'- -uGAGUCGAAGCCauCACGuucuauuuuCGAGCGCg -3'
miRNA:   3'- acUUCGGCUUUGG--GUGUuu-------GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 43327 0.67 0.986756
Target:  5'- cGAAGCUGAAAaCCACGu-CGaAGCAg -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUuuGC-UCGUg -5'
31389 3' -50.5 NC_006623.1 + 36823 0.67 0.986756
Target:  5'- uUGAGGUCuuGACCCAgGggcGACGGGC-Ca -3'
miRNA:   3'- -ACUUCGGcuUUGGGUgU---UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 141069 0.67 0.985002
Target:  5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3'
miRNA:   3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 46399 0.67 0.985002
Target:  5'- aGAAGCCGugGCgCGCgGAGCG-GCAa -3'
miRNA:   3'- aCUUCGGCuuUGgGUG-UUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 22834 0.67 0.983078
Target:  5'- -uGAGCCGAAGCUCcCcuauuaaauuuaGAGCGcAGCACa -3'
miRNA:   3'- acUUCGGCUUUGGGuG------------UUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 135488 0.67 0.988347
Target:  5'- aGGuuuGCagacaGggGuCCCGCGGGCGGGCAg -3'
miRNA:   3'- aCUu--CGg----CuuU-GGGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 119843 0.66 0.989786
Target:  5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3'
miRNA:   3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 134787 0.66 0.991082
Target:  5'- cGAGGCCGAucguugcGCUCAC-GACG-GCAg -3'
miRNA:   3'- aCUUCGGCUu------UGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 102782 0.66 0.991082
Target:  5'- -uGGGCCGAuuCUaACAGGCGAGCc- -3'
miRNA:   3'- acUUCGGCUuuGGgUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 101464 0.66 0.992245
Target:  5'- uUGAGGCUagaauGGAAUCUgccagGCGGACuGAGCGCa -3'
miRNA:   3'- -ACUUCGG-----CUUUGGG-----UGUUUG-CUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 120739 0.66 0.993284
Target:  5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3'
miRNA:   3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 46004 0.78 0.559516
Target:  5'- ---cGCCGGAGCCCG---GCGAGCGCg -3'
miRNA:   3'- acuuCGGCUUUGGGUguuUGCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.