miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 120543 0.67 0.985002
Target:  5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3'
miRNA:   3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 54252 0.68 0.97348
Target:  5'- -uGAGUCGAAGCCauCACGuucuauuuuCGAGCGCg -3'
miRNA:   3'- acUUCGGCUUUGG--GUGUuu-------GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 134528 0.68 0.97348
Target:  5'- cGAA-CCGAcACCCGCAAACGAa--- -3'
miRNA:   3'- aCUUcGGCUuUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 137912 0.68 0.975921
Target:  5'- cGAGcuGCCGGugcucuauaucagAGCCCGgGGAgGGGCGCa -3'
miRNA:   3'- aCUU--CGGCU-------------UUGGGUgUUUgCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 144751 0.68 0.976182
Target:  5'- aUGAuuCCGc-GCCCGgcAGCGAGCACg -3'
miRNA:   3'- -ACUucGGCuuUGGGUguUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131152 0.68 0.978676
Target:  5'- cGAGGCaccuGCCCAgAcccCGAGCACg -3'
miRNA:   3'- aCUUCGgcuuUGGGUgUuu-GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 113099 0.67 0.980972
Target:  5'- uUGGAGUCGGGgauGCUCGCAGuauacGCGcGGCACc -3'
miRNA:   3'- -ACUUCGGCUU---UGGGUGUU-----UGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 114787 0.67 0.980972
Target:  5'- gGAAGCgGAAGugccuCCCACAAuaucAGCACa -3'
miRNA:   3'- aCUUCGgCUUU-----GGGUGUUugc-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 129304 0.67 0.983078
Target:  5'- gGAAugcGCCGG--UCCGCuGGACGAGUACg -3'
miRNA:   3'- aCUU---CGGCUuuGGGUG-UUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 144323 0.68 0.97348
Target:  5'- gGGAGCUGGAAgCCGCAGcgaaaGAGcCACc -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUUug---CUC-GUG- -5'
31389 3' -50.5 NC_006623.1 + 136338 0.69 0.964052
Target:  5'- uUGAGGCCGGcgGGCUUACGGACGAu--- -3'
miRNA:   3'- -ACUUCGGCU--UUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 131563 0.7 0.933557
Target:  5'- -aGAGCCGGaaauuacucaGACCC-CGAGCGcGGCACc -3'
miRNA:   3'- acUUCGGCU----------UUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 130890 0.74 0.778755
Target:  5'- cGggGauuucuaCCGAGACCC-CGAGCGcGGCACa -3'
miRNA:   3'- aCuuC-------GGCUUUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 8630 0.73 0.843647
Target:  5'- aGAAGCC--AACCCAUAuGCGGGCcCa -3'
miRNA:   3'- aCUUCGGcuUUGGGUGUuUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 138854 0.73 0.843647
Target:  5'- --cGGCCGAggGugCCACAAGC-AGCACc -3'
miRNA:   3'- acuUCGGCU--UugGGUGUUUGcUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 121700 0.72 0.852004
Target:  5'- -aAGGCCGAGGCCUc--GACGAGCAg -3'
miRNA:   3'- acUUCGGCUUUGGGuguUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 129261 0.71 0.897309
Target:  5'- aGGAGCagGAAAacgCCACGGACGAGCu- -3'
miRNA:   3'- aCUUCGg-CUUUg--GGUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 136585 0.71 0.897309
Target:  5'- aGggGCCGAAGa-CGCGGccGCGGGCAa -3'
miRNA:   3'- aCuuCGGCUUUggGUGUU--UGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 52485 0.7 0.92252
Target:  5'- gGAAGuuGAAAUCUGCAGACGcGC-Ca -3'
miRNA:   3'- aCUUCggCUUUGGGUGUUUGCuCGuG- -5'
31389 3' -50.5 NC_006623.1 + 126665 0.7 0.92817
Target:  5'- cGAGGCgGAAAUCUAUugGAGCGuuuAGCGCg -3'
miRNA:   3'- aCUUCGgCUUUGGGUG--UUUGC---UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.