miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 137128 1.11 0.00626
Target:  5'- cUGAAGCCGAAACCCACAAACGAGCACg -3'
miRNA:   3'- -ACUUCGGCUUUGGGUGUUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 46004 0.78 0.559516
Target:  5'- ---cGCCGGAGCCCG---GCGAGCGCg -3'
miRNA:   3'- acuuCGGCUUUGGGUguuUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 104820 0.74 0.769935
Target:  5'- aGAAGCCGuu-CCgACGAAUGAGCu- -3'
miRNA:   3'- aCUUCGGCuuuGGgUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 130890 0.74 0.778755
Target:  5'- cGggGauuucuaCCGAGACCC-CGAGCGcGGCACa -3'
miRNA:   3'- aCuuC-------GGCUUUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 8630 0.73 0.843647
Target:  5'- aGAAGCC--AACCCAUAuGCGGGCcCa -3'
miRNA:   3'- aCUUCGGcuUUGGGUGUuUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 138854 0.73 0.843647
Target:  5'- --cGGCCGAggGugCCACAAGC-AGCACc -3'
miRNA:   3'- acuUCGGCU--UugGGUGUUUGcUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 139912 0.72 0.852004
Target:  5'- -aAGGCCGAGGCCUc--GACGAGCAg -3'
miRNA:   3'- acUUCGGCUUUGGGuguUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 121700 0.72 0.852004
Target:  5'- -aAGGCCGAGGCCUc--GACGAGCAg -3'
miRNA:   3'- acUUCGGCUUUGGGuguUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 136585 0.71 0.897309
Target:  5'- aGggGCCGAAGa-CGCGGccGCGGGCAa -3'
miRNA:   3'- aCuuCGGCUUUggGUGUU--UGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 129261 0.71 0.897309
Target:  5'- aGGAGCagGAAAacgCCACGGACGAGCu- -3'
miRNA:   3'- aCUUCGg-CUUUg--GGUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 3062 0.7 0.92252
Target:  5'- aUGGAGCCGAa--CUGCAGGCGAcGCGa -3'
miRNA:   3'- -ACUUCGGCUuugGGUGUUUGCU-CGUg -5'
31389 3' -50.5 NC_006623.1 + 52485 0.7 0.92252
Target:  5'- gGAAGuuGAAAUCUGCAGACGcGC-Ca -3'
miRNA:   3'- aCUUCggCUUUGGGUGUUUGCuCGuG- -5'
31389 3' -50.5 NC_006623.1 + 126665 0.7 0.92817
Target:  5'- cGAGGCgGAAAUCUAUugGAGCGuuuAGCGCg -3'
miRNA:   3'- aCUUCGgCUUUGGGUG--UUUGC---UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131563 0.7 0.933557
Target:  5'- -aGAGCCGGaaauuacucaGACCC-CGAGCGcGGCACc -3'
miRNA:   3'- acUUCGGCU----------UUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 59667 0.7 0.938681
Target:  5'- cUGGAGuCUGAAGCUUAUcAACGGGCAa -3'
miRNA:   3'- -ACUUC-GGCUUUGGGUGuUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 675 0.69 0.94815
Target:  5'- cGGAGCCucgcGAAAUCCAacGGCGGGCGg -3'
miRNA:   3'- aCUUCGG----CUUUGGGUguUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 136422 0.69 0.948596
Target:  5'- cGggGCacuucuuuuucCCCACAAGCaGAGCGCa -3'
miRNA:   3'- aCuuCGgcuuu------GGGUGUUUG-CUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 136338 0.69 0.964052
Target:  5'- uUGAGGCCGGcgGGCUUACGGACGAu--- -3'
miRNA:   3'- -ACUUCGGCU--UUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 1952 0.68 0.970259
Target:  5'- aGcAAGUgCGAccuAGCCCGCAggcaucuaugcauAACGAGCACu -3'
miRNA:   3'- aC-UUCG-GCU---UUGGGUGU-------------UUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 112071 0.68 0.970563
Target:  5'- gUGGAGCuauuCGAAACCCcucGCGcGCG-GCACu -3'
miRNA:   3'- -ACUUCG----GCUUUGGG---UGUuUGCuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.