miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 675 0.69 0.94815
Target:  5'- cGGAGCCucgcGAAAUCCAacGGCGGGCGg -3'
miRNA:   3'- aCUUCGG----CUUUGGGUguUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 1952 0.68 0.970259
Target:  5'- aGcAAGUgCGAccuAGCCCGCAggcaucuaugcauAACGAGCACu -3'
miRNA:   3'- aC-UUCG-GCU---UUGGGUGU-------------UUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 3062 0.7 0.92252
Target:  5'- aUGGAGCCGAa--CUGCAGGCGAcGCGa -3'
miRNA:   3'- -ACUUCGGCUuugGGUGUUUGCU-CGUg -5'
31389 3' -50.5 NC_006623.1 + 8630 0.73 0.843647
Target:  5'- aGAAGCC--AACCCAUAuGCGGGCcCa -3'
miRNA:   3'- aCUUCGGcuUUGGGUGUuUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 12328 0.67 0.980972
Target:  5'- cUGAGGUCaGAAuCCCGCc-ACGaAGCACa -3'
miRNA:   3'- -ACUUCGG-CUUuGGGUGuuUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 22834 0.67 0.983078
Target:  5'- -uGAGCCGAAGCUCcCcuauuaaauuuaGAGCGcAGCACa -3'
miRNA:   3'- acUUCGGCUUUGGGuG------------UUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 27165 0.66 0.994208
Target:  5'- gGAAuuGCCGuggguuuucacGGCCCGCcgaccuuGACGGGCACu -3'
miRNA:   3'- aCUU--CGGCu----------UUGGGUGu------UUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 36823 0.67 0.986756
Target:  5'- uUGAGGUCuuGACCCAgGggcGACGGGC-Ca -3'
miRNA:   3'- -ACUUCGGcuUUGGGUgU---UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 43327 0.67 0.986756
Target:  5'- cGAAGCUGAAAaCCACGu-CGaAGCAg -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUuuGC-UCGUg -5'
31389 3' -50.5 NC_006623.1 + 46004 0.78 0.559516
Target:  5'- ---cGCCGGAGCCCG---GCGAGCGCg -3'
miRNA:   3'- acuuCGGCUUUGGGUguuUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 46399 0.67 0.985002
Target:  5'- aGAAGCCGugGCgCGCgGAGCG-GCAa -3'
miRNA:   3'- aCUUCGGCuuUGgGUG-UUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 52485 0.7 0.92252
Target:  5'- gGAAGuuGAAAUCUGCAGACGcGC-Ca -3'
miRNA:   3'- aCUUCggCUUUGGGUGUUUGCuCGuG- -5'
31389 3' -50.5 NC_006623.1 + 54252 0.68 0.97348
Target:  5'- -uGAGUCGAAGCCauCACGuucuauuuuCGAGCGCg -3'
miRNA:   3'- acUUCGGCUUUGG--GUGUuu-------GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 59667 0.7 0.938681
Target:  5'- cUGGAGuCUGAAGCUUAUcAACGGGCAa -3'
miRNA:   3'- -ACUUC-GGCUUUGGGUGuUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 69101 0.66 0.994121
Target:  5'- aGAAgcuGCCGGGuuuCCCAgCAAguccugcGCGAGCAUu -3'
miRNA:   3'- aCUU---CGGCUUu--GGGU-GUU-------UGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 87078 0.66 0.993284
Target:  5'- uUGAGGgCGGuGGCCCAaggguUGAGCGCu -3'
miRNA:   3'- -ACUUCgGCU-UUGGGUguuu-GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 101464 0.66 0.992245
Target:  5'- uUGAGGCUagaauGGAAUCUgccagGCGGACuGAGCGCa -3'
miRNA:   3'- -ACUUCGG-----CUUUGGG-----UGUUUG-CUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 102782 0.66 0.991082
Target:  5'- -uGGGCCGAuuCUaACAGGCGAGCc- -3'
miRNA:   3'- acUUCGGCUuuGGgUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 104820 0.74 0.769935
Target:  5'- aGAAGCCGuu-CCgACGAAUGAGCu- -3'
miRNA:   3'- aCUUCGGCuuuGGgUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 111670 0.66 0.992245
Target:  5'- -cGGGCCGcuGCCauuucaACGAACGGGCcCg -3'
miRNA:   3'- acUUCGGCuuUGGg-----UGUUUGCUCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.