miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 148513 0.67 0.980972
Target:  5'- uUGGAGUCGGGgauGCUCGCAGuauacGCGcGGCACc -3'
miRNA:   3'- -ACUUCGGCUU---UGGGUGUU-----UGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 146824 0.67 0.980972
Target:  5'- gGAAGCgGAAGugccuCCCACAAuaucAGCACa -3'
miRNA:   3'- aCUUCGgCUUU-----GGGUGUUugc-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 144751 0.68 0.976182
Target:  5'- aUGAuuCCGc-GCCCGgcAGCGAGCACg -3'
miRNA:   3'- -ACUucGGCuuUGGGUguUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 144323 0.68 0.97348
Target:  5'- gGGAGCUGGAAgCCGCAGcgaaaGAGcCACc -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUUug---CUC-GUG- -5'
31389 3' -50.5 NC_006623.1 + 141768 0.66 0.989786
Target:  5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3'
miRNA:   3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 141069 0.67 0.985002
Target:  5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3'
miRNA:   3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 140873 0.66 0.993284
Target:  5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3'
miRNA:   3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 139912 0.72 0.852004
Target:  5'- -aAGGCCGAGGCCUc--GACGAGCAg -3'
miRNA:   3'- acUUCGGCUUUGGGuguUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 138854 0.73 0.843647
Target:  5'- --cGGCCGAggGugCCACAAGC-AGCACc -3'
miRNA:   3'- acuUCGGCU--UugGGUGUUUGcUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 137912 0.68 0.975921
Target:  5'- cGAGcuGCCGGugcucuauaucagAGCCCGgGGAgGGGCGCa -3'
miRNA:   3'- aCUU--CGGCU-------------UUGGGUgUUUgCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 137128 1.11 0.00626
Target:  5'- cUGAAGCCGAAACCCACAAACGAGCACg -3'
miRNA:   3'- -ACUUCGGCUUUGGGUGUUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 136585 0.71 0.897309
Target:  5'- aGggGCCGAAGa-CGCGGccGCGGGCAa -3'
miRNA:   3'- aCuuCGGCUUUggGUGUU--UGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 136422 0.69 0.948596
Target:  5'- cGggGCacuucuuuuucCCCACAAGCaGAGCGCa -3'
miRNA:   3'- aCuuCGgcuuu------GGGUGUUUG-CUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 136338 0.69 0.964052
Target:  5'- uUGAGGCCGGcgGGCUUACGGACGAu--- -3'
miRNA:   3'- -ACUUCGGCU--UUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 135488 0.67 0.988347
Target:  5'- aGGuuuGCagacaGggGuCCCGCGGGCGGGCAg -3'
miRNA:   3'- aCUu--CGg----CuuU-GGGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 134787 0.66 0.991082
Target:  5'- cGAGGCCGAucguugcGCUCAC-GACG-GCAg -3'
miRNA:   3'- aCUUCGGCUu------UGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 134528 0.68 0.97348
Target:  5'- cGAA-CCGAcACCCGCAAACGAa--- -3'
miRNA:   3'- aCUUcGGCUuUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 133465 0.66 0.992245
Target:  5'- cGAAGacgaCGAAGuCCC-CGAGgacacCGAGCACg -3'
miRNA:   3'- aCUUCg---GCUUU-GGGuGUUU-----GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131563 0.7 0.933557
Target:  5'- -aGAGCCGGaaauuacucaGACCC-CGAGCGcGGCACc -3'
miRNA:   3'- acUUCGGCU----------UUGGGuGUUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131152 0.68 0.978676
Target:  5'- cGAGGCaccuGCCCAgAcccCGAGCACg -3'
miRNA:   3'- aCUUCGgcuuUGGGUgUuu-GCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.