miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 22834 0.67 0.983078
Target:  5'- -uGAGCCGAAGCUCcCcuauuaaauuuaGAGCGcAGCACa -3'
miRNA:   3'- acUUCGGCUUUGGGuG------------UUUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 12328 0.67 0.980972
Target:  5'- cUGAGGUCaGAAuCCCGCc-ACGaAGCACa -3'
miRNA:   3'- -ACUUCGG-CUUuGGGUGuuUGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 148513 0.67 0.980972
Target:  5'- uUGGAGUCGGGgauGCUCGCAGuauacGCGcGGCACc -3'
miRNA:   3'- -ACUUCGGCUU---UGGGUGUU-----UGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 146824 0.67 0.980972
Target:  5'- gGAAGCgGAAGugccuCCCACAAuaucAGCACa -3'
miRNA:   3'- aCUUCGgCUUU-----GGGUGUUugc-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 114787 0.67 0.980972
Target:  5'- gGAAGCgGAAGugccuCCCACAAuaucAGCACa -3'
miRNA:   3'- aCUUCGgCUUU-----GGGUGUUugc-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 113099 0.67 0.980972
Target:  5'- uUGGAGUCGGGgauGCUCGCAGuauacGCGcGGCACc -3'
miRNA:   3'- -ACUUCGGCUU---UGGGUGUU-----UGC-UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 131152 0.68 0.978676
Target:  5'- cGAGGCaccuGCCCAgAcccCGAGCACg -3'
miRNA:   3'- aCUUCGgcuuUGGGUgUuu-GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 144751 0.68 0.976182
Target:  5'- aUGAuuCCGc-GCCCGgcAGCGAGCACg -3'
miRNA:   3'- -ACUucGGCuuUGGGUguUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 116860 0.68 0.976182
Target:  5'- aUGAuuCCGc-GCCCGgcAGCGAGCACg -3'
miRNA:   3'- -ACUucGGCuuUGGGUguUUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 137912 0.68 0.975921
Target:  5'- cGAGcuGCCGGugcucuauaucagAGCCCGgGGAgGGGCGCa -3'
miRNA:   3'- aCUU--CGGCU-------------UUGGGUgUUUgCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 123700 0.68 0.975921
Target:  5'- cGAGcuGCCGGugcucuauaucagAGCCCGgGGAgGGGCGCa -3'
miRNA:   3'- aCUU--CGGCU-------------UUGGGUgUUUgCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 117289 0.68 0.97348
Target:  5'- gGGAGCUGGAAgCCGCAGcgaaaGAGcCACc -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUUug---CUC-GUG- -5'
31389 3' -50.5 NC_006623.1 + 134528 0.68 0.97348
Target:  5'- cGAA-CCGAcACCCGCAAACGAa--- -3'
miRNA:   3'- aCUUcGGCUuUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 144323 0.68 0.97348
Target:  5'- gGGAGCUGGAAgCCGCAGcgaaaGAGcCACc -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUUug---CUC-GUG- -5'
31389 3' -50.5 NC_006623.1 + 54252 0.68 0.97348
Target:  5'- -uGAGUCGAAGCCauCACGuucuauuuuCGAGCGCg -3'
miRNA:   3'- acUUCGGCUUUGG--GUGUuu-------GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 112071 0.68 0.970563
Target:  5'- gUGGAGCuauuCGAAACCCcucGCGcGCG-GCACu -3'
miRNA:   3'- -ACUUCG----GCUUUGGG---UGUuUGCuCGUG- -5'
31389 3' -50.5 NC_006623.1 + 1952 0.68 0.970259
Target:  5'- aGcAAGUgCGAccuAGCCCGCAggcaucuaugcauAACGAGCACu -3'
miRNA:   3'- aC-UUCG-GCU---UUGGGUGU-------------UUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 136338 0.69 0.964052
Target:  5'- uUGAGGCCGGcgGGCUUACGGACGAu--- -3'
miRNA:   3'- -ACUUCGGCU--UUGGGUGUUUGCUcgug -5'
31389 3' -50.5 NC_006623.1 + 136422 0.69 0.948596
Target:  5'- cGggGCacuucuuuuucCCCACAAGCaGAGCGCa -3'
miRNA:   3'- aCuuCGgcuuu------GGGUGUUUG-CUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 675 0.69 0.94815
Target:  5'- cGGAGCCucgcGAAAUCCAacGGCGGGCGg -3'
miRNA:   3'- aCUUCGG----CUUUGGGUguUUGCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.