miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31457 5' -43.4 NC_006649.1 + 5568 0.71 0.956474
Target:  5'- uCCUAUAAUauUAUAGGAAUAaUUCCUa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUAUcAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 5476 0.71 0.941214
Target:  5'- uUCUAUAAUaGUAUAGGAAUuaUUCCUa -3'
miRNA:   3'- -GGGUAUUAcCAUAUCCUUAucAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31484 0.72 0.929326
Target:  5'- uCCUAUAAUaGUAUAGGAAUGaUUCUUa -3'
miRNA:   3'- -GGGUAUUAcCAUAUCCUUAUcAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31638 0.73 0.87685
Target:  5'- uCCCAUAAaauUAUGGGAAcAGUUUCCa -3'
miRNA:   3'- -GGGUAUUaccAUAUCCUUaUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31344 0.74 0.858893
Target:  5'- uUCCAUAAUauUAUGGaAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUUAccAUAUCcUUAUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31640 0.74 0.839742
Target:  5'- uCCCAUAAau-UAUGGGAAcuGUUCCCa -3'
miRNA:   3'- -GGGUAUUaccAUAUCCUUauCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31436 0.75 0.819491
Target:  5'- uCCUAUAcuauUAUAGGAAUGGUUUCCa -3'
miRNA:   3'- -GGGUAUuaccAUAUCCUUAUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31438 0.76 0.764778
Target:  5'- uCCCAUAAUauUAUAGGAAUAaUUCCUa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUAUcAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 5474 0.78 0.644499
Target:  5'- uCCCAUAAUauUAUGGGAAUGGUaCCUa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUAUCAaGGG- -5'
31457 5' -43.4 NC_006649.1 + 31275 0.8 0.546364
Target:  5'- uUCCAUAAUGcUAUAGGAAUAaUUCCUa -3'
miRNA:   3'- -GGGUAUUACcAUAUCCUUAUcAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31529 0.81 0.510645
Target:  5'- uCCUAUAcuauUAUGGGAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUuaccAUAUCCUUAUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31528 0.83 0.410319
Target:  5'- uCCUAUAAUuGUAUAGGAAcuGUUCCCa -3'
miRNA:   3'- -GGGUAUUAcCAUAUCCUUauCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 5405 0.84 0.360133
Target:  5'- uCCCAUAAUGcUAUAGGAAUAaUUCCUa -3'
miRNA:   3'- -GGGUAUUACcAUAUCCUUAUcAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 5613 0.85 0.332144
Target:  5'- uCCCAUAAUuuUAUGGGAAcAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUaUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31686 0.85 0.332144
Target:  5'- uCCCAUAAUuuUAUGGGAAcAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUaUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31369 0.85 0.31439
Target:  5'- uCCCAUAAUGacAUAGGAAUAGUUUCUa -3'
miRNA:   3'- -GGGUAUUACcaUAUCCUUAUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 5522 0.86 0.281062
Target:  5'- uCCCAUAAUauUAUGGGAuUAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUuAUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31593 0.86 0.273181
Target:  5'- uCCCAUAAUu-UAUGGGAAUAGUUCCUa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUAUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 31390 0.88 0.216411
Target:  5'- uCCUAUAAUauUAUGGGAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUAUCAAGGG- -5'
31457 5' -43.4 NC_006649.1 + 5520 0.89 0.197872
Target:  5'- uCCUAUAAUauUAUAGGAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUUAccAUAUCCUUAUCAAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.