miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31458 3' -42.4 NC_006649.1 + 5568 0.66 0.999551
Target:  5'- uCCUAUAAUaUUAUaGGAAUAaUUCCUa -3'
miRNA:   3'- -GGGUAUUAaAAUAcCCUUGUcAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31436 0.66 0.999054
Target:  5'- uCCUAUAcuaUUAUaGGAAUGGUUUCCa -3'
miRNA:   3'- -GGGUAUuaaAAUAcCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 24088 0.69 0.992892
Target:  5'- gCCAaGAUUaug-GGGGGCAGUgaaauucauugcaUCCCg -3'
miRNA:   3'- gGGUaUUAAaauaCCCUUGUCA-------------AGGG- -5'
31458 3' -42.4 NC_006649.1 + 31461 0.73 0.926348
Target:  5'- uCUUAUAGcaUUAUGGGAACcaUUCCCa -3'
miRNA:   3'- -GGGUAUUaaAAUACCCUUGucAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 8881 0.75 0.853865
Target:  5'- aCCCuucaGAUUUUAUGGGuuUGGUUCuCCa -3'
miRNA:   3'- -GGGua--UUAAAAUACCCuuGUCAAG-GG- -5'
31458 3' -42.4 NC_006649.1 + 31392 0.78 0.722257
Target:  5'- uUCCAUAAUaUUAUGGaauUAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAaAAUACCcuuGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31528 0.8 0.611144
Target:  5'- uCCUAUAAUUgUAUaGGAACuGUUCCCa -3'
miRNA:   3'- -GGGUAUUAAaAUAcCCUUGuCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31252 0.82 0.5374
Target:  5'- uCCUAUAccaUUAUGGGAAUGGUUUCCa -3'
miRNA:   3'- -GGGUAUuaaAAUACCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 5520 0.82 0.525374
Target:  5'- uCCUAUAAUaUUAUaGGAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUUAaAAUAcCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31344 0.83 0.48995
Target:  5'- uUCCAUAAUaUUAUGGaAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUUAaAAUACCcUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31595 0.85 0.381136
Target:  5'- -nCAUAA-UUUAUGGGAAUAGUUCCUa -3'
miRNA:   3'- ggGUAUUaAAAUACCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31597 0.86 0.351776
Target:  5'- uCCUAgaa--UUAUGGGAACAGUUCCUa -3'
miRNA:   3'- -GGGUauuaaAAUACCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 5474 0.87 0.297996
Target:  5'- uCCCAUAAUaUUAUGGGAAUGGUaCCUa -3'
miRNA:   3'- -GGGUAUUAaAAUACCCUUGUCAaGGG- -5'
31458 3' -42.4 NC_006649.1 + 31481 0.88 0.258227
Target:  5'- uCCCAUAAUagUAUaGGAAUAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAaaAUAcCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 5382 0.89 0.250813
Target:  5'- uCCUAUAccaUUAUGGGAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUuaaAAUACCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31529 0.89 0.250813
Target:  5'- uCCUAUAcuaUUAUGGGAAUGGUUCCCa -3'
miRNA:   3'- -GGGUAUuaaAAUACCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31300 0.91 0.191773
Target:  5'- uCCCAUAAUggUAUaGGAAUAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAaaAUAcCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 5430 0.91 0.191773
Target:  5'- uCCCAUAAUggUAUaGGAAUAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAaaAUAcCCUUGUCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 31640 0.93 0.136452
Target:  5'- uCCCAUAAa-UUAUGGGAACuGUUCCCa -3'
miRNA:   3'- -GGGUAUUaaAAUACCCUUGuCAAGGG- -5'
31458 3' -42.4 NC_006649.1 + 5522 0.96 0.090142
Target:  5'- uCCCAUAAUaUUAUGGGAuUAGUUCCCa -3'
miRNA:   3'- -GGGUAUUAaAAUACCCUuGUCAAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.