miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31465 5' -44.4 NC_006649.1 + 31587 0.68 0.973809
Target:  5'- aUGGGAACaGUUCCUAUAcaauUAUAGg -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUuaucAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31649 0.68 0.97043
Target:  5'- -aGGAACUAUUCCCAUAAa------- -3'
miRNA:   3'- acCCUUGGUAAGGGUAUUaucauauc -5'
31465 5' -44.4 NC_006649.1 + 31542 0.69 0.953795
Target:  5'- -aGGAACUGUUCCCAUAAUuc--UAGg -3'
miRNA:   3'- acCCUUGGUAAGGGUAUUAucauAUC- -5'
31465 5' -44.4 NC_006649.1 + 5371 0.7 0.911557
Target:  5'- aUGGGAACUAUUCCUAUAc-------- -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUuaucauauc -5'
31465 5' -44.4 NC_006649.1 + 31241 0.7 0.911557
Target:  5'- aUGGGAACUAUUCCUAUAc-------- -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUuaucauauc -5'
31465 5' -44.4 NC_006649.1 + 31697 0.72 0.852398
Target:  5'- aUGGaAACUGUUCCCAUAAUuuUAUGGg -3'
miRNA:   3'- -ACCcUUGGUAAGGGUAUUAucAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 5511 0.72 0.832684
Target:  5'- -aGGAAUUAUUCCUAUAAUAuUAUAGg -3'
miRNA:   3'- acCCUUGGUAAGGGUAUUAUcAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31355 0.73 0.811888
Target:  5'- -aGGAAUaGUUUCUAUAAUAGUAUAGg -3'
miRNA:   3'- acCCUUGgUAAGGGUAUUAUCAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 5485 0.73 0.811888
Target:  5'- -aGGAAUaGUUUCUAUAAUAGUAUAGg -3'
miRNA:   3'- acCCUUGgUAAGGGUAUUAUCAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31333 0.78 0.559604
Target:  5'- aUGGGAACUAaUUCCAUAAUAuUAUGGa -3'
miRNA:   3'- -ACCCUUGGUaAGGGUAUUAUcAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31582 0.78 0.547405
Target:  5'- aUGGGAACaGUUCCCAUAAUu-UAUGGg -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUUAucAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 5531 0.78 0.547405
Target:  5'- -aGGuACCAUUCCCAUAAUAuUAUGGg -3'
miRNA:   3'- acCCuUGGUAAGGGUAUUAUcAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31540 0.79 0.476337
Target:  5'- gUGGGAACUAUUCCUAUAcUAuUAUGGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUuAUcAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31264 0.79 0.476337
Target:  5'- aUGGGAAUgGUUUCCAUAAUGcUAUAGg -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUUAUcAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31402 0.8 0.431587
Target:  5'- aUGGGAAUgGUUCCCAUAAUGcUAUAa -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUUAUcAUAUc -5'
31465 5' -44.4 NC_006649.1 + 31627 0.81 0.389391
Target:  5'- cUGGGAACUGUUCCCAUAAaauUAUGGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUUaucAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 5554 0.81 0.389391
Target:  5'- cUGGGAACUGUUCCCAUAAaauUAUGGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUUaucAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 5463 0.85 0.249372
Target:  5'- aUGGGAACUAaUCCCAUAAUAuUAUGGg -3'
miRNA:   3'- -ACCCUUGGUaAGGGUAUUAUcAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 5394 0.86 0.215053
Target:  5'- aUGGGAAUgGUUCCCAUAAUGcUAUAGg -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUUAUcAUAUC- -5'
31465 5' -44.4 NC_006649.1 + 31629 0.86 0.208695
Target:  5'- aUGGGAACUGUUCCCAUAAU--UAUAGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUUAucAUAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.