Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 3151 | 5' | -55.7 | NC_001499.1 | + | 5186 | 1.09 | 2.9e-05 |
|
Target: 5'- aAUCACUCAGAGGAGACCCUCCCAAGGa -3' miRNA: 3'- -UAGUGAGUCUCCUCUGGGAGGGUUCC- -5' |
|||||||
| 3151 | 5' | -55.7 | NC_001499.1 | + | 122 | 1.09 | 2.9e-05 |
|
Target: 5'- aAUCACUCAGAGGAGACCCUCCCAAGGa -3' miRNA: 3'- -UAGUGAGUCUCCUCUGGGAGGGUUCC- -5' |
|||||||
| 3151 | 5' | -55.7 | NC_001499.1 | + | 2795 | 0.78 | 0.013983 |
|
Target: 5'- cUC-CUCAGAGGAGGCCUUgCUGAGGc -3' miRNA: 3'- uAGuGAGUCUCCUCUGGGAgGGUUCC- -5' |
|||||||
| 3151 | 5' | -55.7 | NC_001499.1 | + | 150 | 0.7 | 0.067517 |
|
Target: 5'- --gGCUCguccgGGAucgGGAGACCCcugCCCAGGGa -3' miRNA: 3'- uagUGAG-----UCU---CCUCUGGGa--GGGUUCC- -5' |
|||||||
| 3151 | 5' | -55.7 | NC_001499.1 | + | 5090 | 0.67 | 0.116242 |
|
Target: 5'- aGUCACUCGGAGGAcuGGCgCg-CCGAGu -3' miRNA: 3'- -UAGUGAGUCUCCU--CUGgGagGGUUCc -5' |
|||||||
| 3151 | 5' | -55.7 | NC_001499.1 | + | 3836 | 0.66 | 0.141872 |
|
Target: 5'- aGUC-UUCAGAgcaGGAGACCCaUCCaCAGGc -3' miRNA: 3'- -UAGuGAGUCU---CCUCUGGG-AGG-GUUCc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home