miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31512 5' -45.8 NC_006660.1 + 10665 0.67 0.884761
Target:  5'- ---nUCUGGCCAGAUCUcGUcagAUAc- -3'
miRNA:   3'- gucuAGACCGGUCUAGA-CAaa-UAUau -5'
31512 5' -45.8 NC_006660.1 + 10594 0.68 0.80419
Target:  5'- gCAGAUCUaGCCAGAUCU-UUUAa--- -3'
miRNA:   3'- -GUCUAGAcCGGUCUAGAcAAAUauau -5'
31512 5' -45.8 NC_006660.1 + 11632 0.69 0.757443
Target:  5'- ---nUCUGGUCAGAUCUaUUUAUAUc -3'
miRNA:   3'- gucuAGACCGGUCUAGAcAAAUAUAu -5'
31512 5' -45.8 NC_006660.1 + 10632 0.7 0.732934
Target:  5'- gAGAUCUGGCCAGAUa---------- -3'
miRNA:   3'- gUCUAGACCGGUCUAgacaaauauau -5'
31512 5' -45.8 NC_006660.1 + 10651 0.73 0.553673
Target:  5'- uCAGAUCUGaCCAGAUCUGg------- -3'
miRNA:   3'- -GUCUAGACcGGUCUAGACaaauauau -5'
31512 5' -45.8 NC_006660.1 + 11666 0.76 0.368346
Target:  5'- cCAGAuacaauuauaUCUGGUCAGAUCUGaUUAUAUc -3'
miRNA:   3'- -GUCU----------AGACCGGUCUAGACaAAUAUAu -5'
31512 5' -45.8 NC_006660.1 + 10631 0.78 0.276125
Target:  5'- aAGAUCUGGCUAGAUCUGc------- -3'
miRNA:   3'- gUCUAGACCGGUCUAGACaaauauau -5'
31512 5' -45.8 NC_006660.1 + 10570 0.87 0.078655
Target:  5'- aCAGAUCUGGCCAGAUCUGc------- -3'
miRNA:   3'- -GUCUAGACCGGUCUAGACaaauauau -5'
31512 5' -45.8 NC_006660.1 + 10967 0.87 0.078655
Target:  5'- aCAGAUCUGGCCAGAUCUGc------- -3'
miRNA:   3'- -GUCUAGACCGGUCUAGACaaauauau -5'
31512 5' -45.8 NC_006660.1 + 10689 0.89 0.054109
Target:  5'- cCAGAUCUGGUCAGAUCUGaUUAUAUc -3'
miRNA:   3'- -GUCUAGACCGGUCUAGACaAAUAUAu -5'
31512 5' -45.8 NC_006660.1 + 10608 1.08 0.002891
Target:  5'- gCAGAUCUGGCCAGAUCUGUUUAUAUAu -3'
miRNA:   3'- -GUCUAGACCGGUCUAGACAAAUAUAU- -5'
31512 5' -45.8 NC_006660.1 + 10929 1.08 0.002891
Target:  5'- gCAGAUCUGGCCAGAUCUGUUUAUAUAu -3'
miRNA:   3'- -GUCUAGACCGGUCUAGACAAAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.