miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31518 5' -43.1 NC_006661.1 + 5186 0.67 0.907089
Target:  5'- -cUGUUGCuGCAACAGGAuuuucuUCUg -3'
miRNA:   3'- guACAACGuCGUUGUCUUcuuuu-AGG- -5'
31518 5' -43.1 NC_006661.1 + 4252 0.69 0.805668
Target:  5'- -cUGUUGUAGCAACAGGAu------- -3'
miRNA:   3'- guACAACGUCGUUGUCUUcuuuuagg -5'
31518 5' -43.1 NC_006661.1 + 4161 0.72 0.64953
Target:  5'- cCAUGUUGCAGCcACAGGAu--AAUgCu -3'
miRNA:   3'- -GUACAACGUCGuUGUCUUcuuUUAgG- -5'
31518 5' -43.1 NC_006661.1 + 5258 0.73 0.581291
Target:  5'- -cUGUUGCuGCAACAGGAGGc----- -3'
miRNA:   3'- guACAACGuCGUUGUCUUCUuuuagg -5'
31518 5' -43.1 NC_006661.1 + 4040 0.73 0.581291
Target:  5'- -cUGUUGCuGCAACAGGAGGc----- -3'
miRNA:   3'- guACAACGuCGUUGUCUUCUuuuagg -5'
31518 5' -43.1 NC_006661.1 + 5234 0.75 0.459922
Target:  5'- -cUGUUGCAGCAACAGuuaauuuuuuUCCg -3'
miRNA:   3'- guACAACGUCGUUGUCuucuuuu---AGG- -5'
31518 5' -43.1 NC_006661.1 + 4065 0.75 0.459922
Target:  5'- -cUGUUGCAGCAACAGuuuauuuuuuUCCg -3'
miRNA:   3'- guACAACGUCGUUGUCuucuuuu---AGG- -5'
31518 5' -43.1 NC_006661.1 + 4086 0.82 0.184659
Target:  5'- nCAUGUUGCAGCAACAGGAaAAAAc-- -3'
miRNA:   3'- -GUACAACGUCGUUGUCUUcUUUUagg -5'
31518 5' -43.1 NC_006661.1 + 4230 0.86 0.102812
Target:  5'- uCAUGUUGCAGCuACA--GGAAAAUCCu -3'
miRNA:   3'- -GUACAACGUCGuUGUcuUCUUUUAGG- -5'
31518 5' -43.1 NC_006661.1 + 4158 0.92 0.037574
Target:  5'- -uUGUUGCAGCGACAGGAaAAAAUCCu -3'
miRNA:   3'- guACAACGUCGUUGUCUUcUUUUAGG- -5'
31518 5' -43.1 NC_006661.1 + 4062 0.97 0.018717
Target:  5'- uCAUGUUGCAGCAACAGGAGgcAGUCa -3'
miRNA:   3'- -GUACAACGUCGUUGUCUUCuuUUAGg -5'
31518 5' -43.1 NC_006661.1 + 4226 0.99 0.012472
Target:  5'- cCAUGUUGCAGCAACAGGAuAAAGUCCu -3'
miRNA:   3'- -GUACAACGUCGUUGUCUUcUUUUAGG- -5'
31518 5' -43.1 NC_006661.1 + 5236 1.14 0.001119
Target:  5'- uCAUGUUGCAGCAACAGAAGAAAAUCCu -3'
miRNA:   3'- -GUACAACGUCGUUGUCUUCUUUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.