miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31525 3' -44.3 NC_006662.1 + 10799 0.66 0.946422
Target:  5'- ----cAGAUCUGaCCAGAUCUg---- -3'
miRNA:   3'- ccuaaUCUAGACcGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 960 0.66 0.940614
Target:  5'- aGGAUaauagUGGAUUUGGCCAacAUCUUg--- -3'
miRNA:   3'- -CCUA-----AUCUAGACCGGUc-UAGAAauuu -5'
31525 3' -44.3 NC_006662.1 + 10201 0.68 0.888948
Target:  5'- -aAUUAuAUCUGGUCAGAUCUa---- -3'
miRNA:   3'- ccUAAUcUAGACCGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 10201 0.68 0.888948
Target:  5'- -aAUUAcAUCUGGUCAGAUCUa---- -3'
miRNA:   3'- ccUAAUcUAGACCGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 10181 0.68 0.888948
Target:  5'- -aAUUAuAUCUGGUCAGAUCUa---- -3'
miRNA:   3'- ccUAAUcUAGACCGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 10766 0.69 0.830164
Target:  5'- ----cAGAUCUGGUCAGAUCn----- -3'
miRNA:   3'- ccuaaUCUAGACCGGUCUAGaaauuu -5'
31525 3' -44.3 NC_006662.1 + 10470 0.71 0.723229
Target:  5'- aGAUUAGAUCUGGCCAu--------- -3'
miRNA:   3'- cCUAAUCUAGACCGGUcuagaaauuu -5'
31525 3' -44.3 NC_006662.1 + 10823 0.74 0.566535
Target:  5'- uGAcgAGAUCUGGCCAGAUa------ -3'
miRNA:   3'- cCUaaUCUAGACCGGUCUAgaaauuu -5'
31525 3' -44.3 NC_006662.1 + 10782 0.79 0.316338
Target:  5'- uGAUUAuAUCUGGCCAGAUCUc---- -3'
miRNA:   3'- cCUAAUcUAGACCGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 10527 0.82 0.212408
Target:  5'- ----cAGAUCUGGCCAGAUCUg---- -3'
miRNA:   3'- ccuaaUCUAGACCGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 10823 0.82 0.212408
Target:  5'- ----aAGAUCUGGCCAGAUCUa---- -3'
miRNA:   3'- ccuaaUCUAGACCGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 10494 0.82 0.212408
Target:  5'- ----cAGAUCUGGCCAGAUCUg---- -3'
miRNA:   3'- ccuaaUCUAGACCGGUCUAGAaauuu -5'
31525 3' -44.3 NC_006662.1 + 10861 1.11 0.002439
Target:  5'- cGGAUUAGAUCUGGCCAGAUCUUUAAAu -3'
miRNA:   3'- -CCUAAUCUAGACCGGUCUAGAAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.