miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31530 5' -43.3 NC_006662.1 + 10243 0.67 0.947818
Target:  5'- --aUAAauAGAUCUGaCCAGAUgUAAUUa -3'
miRNA:   3'- uaaAUU--UCUAGACcGGUCUAgAUUAG- -5'
31530 5' -43.3 NC_006662.1 + 10206 0.68 0.906898
Target:  5'- -------cAUCUGGUCAGAUCUAu-- -3'
miRNA:   3'- uaaauuucUAGACCGGUCUAGAUuag -5'
31530 5' -43.3 NC_006662.1 + 10200 0.71 0.796332
Target:  5'- -aUUAu--AUCUGGUCAGAUCUAAa- -3'
miRNA:   3'- uaAAUuucUAGACCGGUCUAGAUUag -5'
31530 5' -43.3 NC_006662.1 + 10186 0.75 0.536448
Target:  5'- -------uAUCUGGUCAGAUCUAAUUa -3'
miRNA:   3'- uaaauuucUAGACCGGUCUAGAUUAG- -5'
31530 5' -43.3 NC_006662.1 + 10788 0.78 0.3916
Target:  5'- -------uAUCUGGCCAGAUCUcGUCa -3'
miRNA:   3'- uaaauuucUAGACCGGUCUAGAuUAG- -5'
31530 5' -43.3 NC_006662.1 + 10799 0.8 0.310281
Target:  5'- -----cAGAUCUGaCCAGAUCUGGUCa -3'
miRNA:   3'- uaaauuUCUAGACcGGUCUAGAUUAG- -5'
31530 5' -43.3 NC_006662.1 + 10856 0.82 0.242469
Target:  5'- -----uAGAUCUGGCCAGAUCUuuaaauuGUCu -3'
miRNA:   3'- uaaauuUCUAGACCGGUCUAGAu------UAG- -5'
31530 5' -43.3 NC_006662.1 + 10489 0.84 0.175537
Target:  5'- --aUAAacAGAUCUGGCCAGAUCUGc-- -3'
miRNA:   3'- uaaAUU--UCUAGACCGGUCUAGAUuag -5'
31530 5' -43.3 NC_006662.1 + 10820 0.86 0.13898
Target:  5'- ----cGAGAUCUGGCCAGAUaUAAUCa -3'
miRNA:   3'- uaaauUUCUAGACCGGUCUAgAUUAG- -5'
31530 5' -43.3 NC_006662.1 + 10532 0.86 0.134366
Target:  5'- -cUUAGcAGAUCUGGCCAGAUCUGu-- -3'
miRNA:   3'- uaAAUU-UCUAGACCGGUCUAGAUuag -5'
31530 5' -43.3 NC_006662.1 + 10758 0.91 0.058497
Target:  5'- aAUUUGAccAGAUCUGGUCAGAUCUGAUUa -3'
miRNA:   3'- -UAAAUU--UCUAGACCGGUCUAGAUUAG- -5'
31530 5' -43.3 NC_006662.1 + 10817 1.09 0.004078
Target:  5'- aAUUUAAAGAUCUGGCCAGAUCUAAUCc -3'
miRNA:   3'- -UAAAUUUCUAGACCGGUCUAGAUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.