miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31532 5' -41.3 NC_006820.1 + 21744 0.66 1
Target:  5'- cUAGGGGGG-------GGCGGGCACCg -3'
miRNA:   3'- uAUCUCUCUuguaauaUUGCUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 18489 0.67 1
Target:  5'- -aAGGGAGGACAUUAUGcuuGGCAUUg -3'
miRNA:   3'- uaUCUCUCUUGUAAUAUugcUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 15654 0.67 1
Target:  5'- -aAGGGAG-ACAUgugugGAUGGGCAUCu -3'
miRNA:   3'- uaUCUCUCuUGUAaua--UUGCUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 24697 0.67 1
Target:  5'- cGUAGAGGcAGCGUgguUGGCaGGCGCCu -3'
miRNA:   3'- -UAUCUCUcUUGUAau-AUUGcUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 24417 0.67 1
Target:  5'- -cAGAGGcAGCAgugcuacGCGAGCGCCu -3'
miRNA:   3'- uaUCUCUcUUGUaauau--UGCUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 152172 0.67 1
Target:  5'- -aGGAGAGAAUAaagaguUAACGGaaGCACa -3'
miRNA:   3'- uaUCUCUCUUGUaau---AUUGCU--UGUGg -5'
31532 5' -41.3 NC_006820.1 + 23930 0.67 1
Target:  5'- ----cGAGGGCAUgau--CGGGCGCCa -3'
miRNA:   3'- uaucuCUCUUGUAauauuGCUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 104683 0.66 1
Target:  5'- uUGGAGGGGAUGgcAUGACGuAugACUu -3'
miRNA:   3'- uAUCUCUCUUGUaaUAUUGC-UugUGG- -5'
31532 5' -41.3 NC_006820.1 + 155467 0.66 1
Target:  5'- cUAGAGaAGAACucgAUAugGaAGCACg -3'
miRNA:   3'- uAUCUC-UCUUGuaaUAUugC-UUGUGg -5'
31532 5' -41.3 NC_006820.1 + 17395 0.68 1
Target:  5'- -aAGAGAuguuuGAGCGUUGUGACuGGGCAg- -3'
miRNA:   3'- uaUCUCU-----CUUGUAAUAUUG-CUUGUgg -5'
31532 5' -41.3 NC_006820.1 + 89008 0.68 1
Target:  5'- cUGGuGGAGAGCGUgAUGAUGAAUcuuCCa -3'
miRNA:   3'- uAUC-UCUCUUGUAaUAUUGCUUGu--GG- -5'
31532 5' -41.3 NC_006820.1 + 98885 0.69 1
Target:  5'- cUGGAucGAGAAUAagAUGaACGAAUACCu -3'
miRNA:   3'- uAUCU--CUCUUGUaaUAU-UGCUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 89828 0.66 1
Target:  5'- aAUGaAGGGAuCAUUAUGAUGAauuACAUCa -3'
miRNA:   3'- -UAUcUCUCUuGUAAUAUUGCU---UGUGG- -5'
31532 5' -41.3 NC_006820.1 + 16787 0.69 1
Target:  5'- uUAGA-AGGGCAUUGUAG-GAGCACa -3'
miRNA:   3'- uAUCUcUCUUGUAAUAUUgCUUGUGg -5'
31532 5' -41.3 NC_006820.1 + 138322 0.68 1
Target:  5'- -cAGAGAaugcGAuuGCGUUGUaggGACGGAUGCCu -3'
miRNA:   3'- uaUCUCU----CU--UGUAAUA---UUGCUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 109678 0.66 1
Target:  5'- --cGAGAGAGCAUUuguuuc-GCACCu -3'
miRNA:   3'- uauCUCUCUUGUAAuauugcuUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 112259 0.66 1
Target:  5'- --uGAGAuuGCAUUGUAguaucuACGAACAUa -3'
miRNA:   3'- uauCUCUcuUGUAAUAU------UGCUUGUGg -5'
31532 5' -41.3 NC_006820.1 + 28225 0.68 1
Target:  5'- -aGGAcaccauuGAACGUgaaugAACGAGCACCa -3'
miRNA:   3'- uaUCUcu-----CUUGUAaua--UUGCUUGUGG- -5'
31532 5' -41.3 NC_006820.1 + 94215 0.7 1
Target:  5'- uUGGAGAGAGauuCAagAUAACGGACAa- -3'
miRNA:   3'- uAUCUCUCUU---GUaaUAUUGCUUGUgg -5'
31532 5' -41.3 NC_006820.1 + 187860 0.66 1
Target:  5'- cGUGGAGAGAugAU-GUAugGGaguaACAUg -3'
miRNA:   3'- -UAUCUCUCUugUAaUAUugCU----UGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.