Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31608 | 5' | -60.1 | NC_006879.1 | + | 14998 | 0.68 | 0.252509 |
Target: 5'- uGGCGGCGGuggGGCGacgucuccgauGCAGCcGCCucuuGCGGc -3' miRNA: 3'- -CCGUCGUCu--UCGC-----------CGUCGaCGG----CGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 22182 | 0.67 | 0.301858 |
Target: 5'- cGGUGcGCAGAGuacgucgcGCGGaCGGCU-CCGUGGa -3' miRNA: 3'- -CCGU-CGUCUU--------CGCC-GUCGAcGGCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 10123 | 0.67 | 0.301858 |
Target: 5'- cGCAuCGGGAGCGGCGGauccgGCCGgucucgaacCGGg -3' miRNA: 3'- cCGUcGUCUUCGCCGUCga---CGGC---------GCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 17314 | 0.66 | 0.317261 |
Target: 5'- cGGCuGGCAGAGGCa-CGGCgacgGgUGCGGa -3' miRNA: 3'- -CCG-UCGUCUUCGccGUCGa---CgGCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 12941 | 0.66 | 0.325181 |
Target: 5'- uGCGGCGGAaccAGCGGUcgcGGCUGaCUGUc- -3' miRNA: 3'- cCGUCGUCU---UCGCCG---UCGAC-GGCGcc -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 28018 | 0.72 | 0.135484 |
Target: 5'- aGGCaAGUAGAuauaaauaccaaAGCGGCGGUgGCUGCGu -3' miRNA: 3'- -CCG-UCGUCU------------UCGCCGUCGaCGGCGCc -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 3394 | 1.11 | 0.000112 |
Target: 5'- cGGCAGCAGAAGCGGCAGCUGCCGCGGc -3' miRNA: 3'- -CCGUCGUCUUCGCCGUCGACGGCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 15082 | 0.78 | 0.045298 |
Target: 5'- cGGCGGCGGcguuGGCGGCAGC-GCgGCGc -3' miRNA: 3'- -CCGUCGUCu---UCGCCGUCGaCGgCGCc -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 17243 | 0.74 | 0.083553 |
Target: 5'- gGGC-GCgugGGggGCGGCGGUgGCgGCGGg -3' miRNA: 3'- -CCGuCG---UCuuCGCCGUCGaCGgCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 25502 | 0.72 | 0.124192 |
Target: 5'- gGGCGGCGGGccaacuaGGCGGguugAGUUGgCGCGGg -3' miRNA: 3'- -CCGUCGUCU-------UCGCCg---UCGACgGCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 2707 | 0.69 | 0.221471 |
Target: 5'- aGCuGCgAGggGCacaGGCcGCUGCCGCa- -3' miRNA: 3'- cCGuCG-UCuuCG---CCGuCGACGGCGcc -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 24987 | 0.79 | 0.034324 |
Target: 5'- uGGCGGCGGcAGCGGCGGCggaguuuuuccucGCgGCGGa -3' miRNA: 3'- -CCGUCGUCuUCGCCGUCGa------------CGgCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 16666 | 0.69 | 0.215667 |
Target: 5'- aGguGCccauGAGCGGCcgcgAGCcgUGCCGCGGa -3' miRNA: 3'- cCguCGuc--UUCGCCG----UCG--ACGGCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 16231 | 0.73 | 0.109971 |
Target: 5'- aGCAcGaCGGGAGCGGCGGCggcgacggguucgGCgGCGGg -3' miRNA: 3'- cCGU-C-GUCUUCGCCGUCGa------------CGgCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 15121 | 0.8 | 0.03178 |
Target: 5'- cGGCAGCAGccuGGCgGGCAGcCUGUCgGCGGg -3' miRNA: 3'- -CCGUCGUCu--UCG-CCGUC-GACGG-CGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 19101 | 0.69 | 0.199034 |
Target: 5'- cGGUAGCGGAGucCGGC-GUUGCgGUGGu -3' miRNA: 3'- -CCGUCGUCUUc-GCCGuCGACGgCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 21143 | 0.67 | 0.299599 |
Target: 5'- cGGCAGUuuuGGAAGCagaaccuagaagacGuGCccCUGCCGCGGc -3' miRNA: 3'- -CCGUCG---UCUUCG--------------C-CGucGACGGCGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 13107 | 0.66 | 0.309487 |
Target: 5'- cGCGGCAGAaugagaagAGCGGUgagAGUcacGCCgGCGGc -3' miRNA: 3'- cCGUCGUCU--------UCGCCG---UCGa--CGG-CGCC- -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 22216 | 0.67 | 0.279847 |
Target: 5'- uGGCGGCGGc-GCGGguGUcGCCuuGCGa -3' miRNA: 3'- -CCGUCGUCuuCGCCguCGaCGG--CGCc -5' |
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31608 | 5' | -60.1 | NC_006879.1 | + | 8092 | 0.67 | 0.265894 |
Target: 5'- gGGCAGCGGAGGCaguGGCAcGUUuUCGUGa -3' miRNA: 3'- -CCGUCGUCUUCG---CCGU-CGAcGGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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