miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31629 3' -51.3 NC_006879.1 + 7501 0.66 0.8323
Target:  5'- uGCCACCaGUUggaggaaugGGUGuuGAUGUggugaaaguagaagUCCCGCc -3'
miRNA:   3'- -UGGUGG-CAG---------UCACuuUUGCA--------------AGGGCG- -5'
31629 3' -51.3 NC_006879.1 + 22097 0.66 0.815893
Target:  5'- uACCGCCGUguUGGUGAAGAac--CCCGa -3'
miRNA:   3'- -UGGUGGCA--GUCACUUUUgcaaGGGCg -5'
31629 3' -51.3 NC_006879.1 + 21488 0.67 0.785462
Target:  5'- gGCCuuCCGUCAaUGGAGGaGUUCCUGg -3'
miRNA:   3'- -UGGu-GGCAGUcACUUUUgCAAGGGCg -5'
31629 3' -51.3 NC_006879.1 + 11462 0.67 0.753434
Target:  5'- gGCCGCCGccCAGUcaucGGAGGCGgucacgCCCGa -3'
miRNA:   3'- -UGGUGGCa-GUCA----CUUUUGCaa----GGGCg -5'
31629 3' -51.3 NC_006879.1 + 10273 0.67 0.741361
Target:  5'- uGCCGCCGcggCGGUGGugguGGGCGUcugaggucgcaucUgCCGCa -3'
miRNA:   3'- -UGGUGGCa--GUCACU----UUUGCA-------------AgGGCG- -5'
31629 3' -51.3 NC_006879.1 + 13455 0.68 0.686024
Target:  5'- cGCUgggGCgGUCAGcUGAAAACcaUCCUGCa -3'
miRNA:   3'- -UGG---UGgCAGUC-ACUUUUGcaAGGGCG- -5'
31629 3' -51.3 NC_006879.1 + 6754 0.69 0.671047
Target:  5'- aGCgGCCuuucugagagagguGUgGGUGAGGGCGaaggugUCCCGCa -3'
miRNA:   3'- -UGgUGG--------------CAgUCACUUUUGCa-----AGGGCG- -5'
31629 3' -51.3 NC_006879.1 + 12703 0.7 0.604922
Target:  5'- uCCGCCaG-CAGUGGucggguAACGcgCCCGCg -3'
miRNA:   3'- uGGUGG-CaGUCACUu-----UUGCaaGGGCG- -5'
31629 3' -51.3 NC_006879.1 + 5924 0.7 0.570324
Target:  5'- cACCGCCGUguuccccgAGUGGcgguGCGUggCCCGCg -3'
miRNA:   3'- -UGGUGGCAg-------UCACUuu--UGCAa-GGGCG- -5'
31629 3' -51.3 NC_006879.1 + 12419 0.71 0.536229
Target:  5'- uCCgaGCCGUCAugucuaaagccGUGGAAGCGguggcgcccUCCCGCa -3'
miRNA:   3'- uGG--UGGCAGU-----------CACUUUUGCa--------AGGGCG- -5'
31629 3' -51.3 NC_006879.1 + 21466 0.73 0.439129
Target:  5'- uGCCGCCcUCGGUGuAGAAUag-CCCGCa -3'
miRNA:   3'- -UGGUGGcAGUCAC-UUUUGcaaGGGCG- -5'
31629 3' -51.3 NC_006879.1 + 14449 1.11 0.001148
Target:  5'- uACCACCGUCAGUGAAAACGUUCCCGCc -3'
miRNA:   3'- -UGGUGGCAGUCACUUUUGCAAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.