miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31632 5' -69.7 NC_006879.1 + 17177 1.1 0.000024
Target:  5'- cCCCCCGCCGCCACCGCCGCCCCCCACg -3'
miRNA:   3'- -GGGGGCGGCGGUGGCGGCGGGGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 24931 0.87 0.002101
Target:  5'- aCUCCGCCGCCGCUGCCGCCCCaaggauCCACc -3'
miRNA:   3'- gGGGGCGGCGGUGGCGGCGGGG------GGUG- -5'
31632 5' -69.7 NC_006879.1 + 16168 0.84 0.003382
Target:  5'- -aCCCGUCGCCGCCGCCGCUCCCguCg -3'
miRNA:   3'- ggGGGCGGCGGUGGCGGCGGGGGguG- -5'
31632 5' -69.7 NC_006879.1 + 157 0.77 0.014862
Target:  5'- gCCCCGCCcucgcGCCACC-CCGCgucaCCCCACg -3'
miRNA:   3'- gGGGGCGG-----CGGUGGcGGCGg---GGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 8128 0.77 0.014862
Target:  5'- cCCCCCGgCGCagaGCCGCCucuaCCCCCCGg -3'
miRNA:   3'- -GGGGGCgGCGg--UGGCGGc---GGGGGGUg -5'
31632 5' -69.7 NC_006879.1 + 4403 0.75 0.019624
Target:  5'- cCCCCCGCCaGaaACCGUguuuuuuauCGCCCCCCAg -3'
miRNA:   3'- -GGGGGCGG-CggUGGCG---------GCGGGGGGUg -5'
31632 5' -69.7 NC_006879.1 + 34299 0.74 0.023829
Target:  5'- gCCCUCG-CGCCACC-CCGCgucaCCCCACg -3'
miRNA:   3'- -GGGGGCgGCGGUGGcGGCGg---GGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 17255 0.74 0.024498
Target:  5'- -aCCCGUCGCCgugccucuGCCaGCCGCCCgCCCAg -3'
miRNA:   3'- ggGGGCGGCGG--------UGG-CGGCGGG-GGGUg -5'
31632 5' -69.7 NC_006879.1 + 9812 0.74 0.025186
Target:  5'- gCCCCCGCCacagucggcugGCCccuguACCGagaaCCGCCuCCCCACu -3'
miRNA:   3'- -GGGGGCGG-----------CGG-----UGGC----GGCGG-GGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 7924 0.72 0.033201
Target:  5'- uUCCCGCCGaCCucagcGCgGCCGCCCUCgACu -3'
miRNA:   3'- gGGGGCGGC-GG-----UGgCGGCGGGGGgUG- -5'
31632 5' -69.7 NC_006879.1 + 23604 0.72 0.038101
Target:  5'- uCCUCUGCCGCCAgCGgCGCgCCCUg- -3'
miRNA:   3'- -GGGGGCGGCGGUgGCgGCGgGGGGug -5'
31632 5' -69.7 NC_006879.1 + 24736 0.72 0.038522
Target:  5'- aCCCgcugCCGuuGCCGCUGCCGCUggagauucgguggcgUCCCACc -3'
miRNA:   3'- -GGG----GGCggCGGUGGCGGCGG---------------GGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 15025 0.72 0.039163
Target:  5'- gCgCUGCCGCCaacGCCGCCGCCgggagggCCCGCc -3'
miRNA:   3'- gGgGGCGGCGG---UGGCGGCGGg------GGGUG- -5'
31632 5' -69.7 NC_006879.1 + 16448 0.71 0.040254
Target:  5'- aUCgCCGCCGCCAUCGgUGCCauaCCCGg -3'
miRNA:   3'- -GGgGGCGGCGGUGGCgGCGGg--GGGUg -5'
31632 5' -69.7 NC_006879.1 + 25429 0.71 0.043588
Target:  5'- aCCCCGgCGCCAacucaacCCGCCuaguugGCCCgCCGCc -3'
miRNA:   3'- gGGGGCgGCGGU-------GGCGG------CGGGgGGUG- -5'
31632 5' -69.7 NC_006879.1 + 9333 0.71 0.043708
Target:  5'- cUCCUCGCCaCCAuCCGCCGCCUgaagaCCGCc -3'
miRNA:   3'- -GGGGGCGGcGGU-GGCGGCGGGg----GGUG- -5'
31632 5' -69.7 NC_006879.1 + 7759 0.71 0.047192
Target:  5'- aCUCCCaCCGCCAaggcgaaggggaUGCCGCCCCaCCAa -3'
miRNA:   3'- -GGGGGcGGCGGUg-----------GCGGCGGGG-GGUg -5'
31632 5' -69.7 NC_006879.1 + 10083 0.71 0.047192
Target:  5'- uUCCCCGCCGCCGCa-CCcuugcgacuuuaCCCCCCGa -3'
miRNA:   3'- -GGGGGCGGCGGUGgcGGc-----------GGGGGGUg -5'
31632 5' -69.7 NC_006879.1 + 19973 0.7 0.051506
Target:  5'- uCCCCUGauugggGCCACCGCCGUgCCCaGCc -3'
miRNA:   3'- -GGGGGCgg----CGGUGGCGGCGgGGGgUG- -5'
31632 5' -69.7 NC_006879.1 + 111 0.7 0.054395
Target:  5'- aCCCCgGCC-CCGCCucGCUcCUCCCCGCu -3'
miRNA:   3'- -GGGGgCGGcGGUGG--CGGcGGGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.