miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31632 5' -69.7 NC_006879.1 + 111 0.7 0.054395
Target:  5'- aCCCCgGCC-CCGCCucGCUcCUCCCCGCu -3'
miRNA:   3'- -GGGGgCGGcGGUGG--CGGcGGGGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 157 0.77 0.014862
Target:  5'- gCCCCGCCcucgcGCCACC-CCGCgucaCCCCACg -3'
miRNA:   3'- gGGGGCGG-----CGGUGGcGGCGg---GGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 4403 0.75 0.019624
Target:  5'- cCCCCCGCCaGaaACCGUguuuuuuauCGCCCCCCAg -3'
miRNA:   3'- -GGGGGCGG-CggUGGCG---------GCGGGGGGUg -5'
31632 5' -69.7 NC_006879.1 + 4826 0.67 0.093342
Target:  5'- aCCCUCGCgGCC-CUGgaCGCCCaCCgGCu -3'
miRNA:   3'- -GGGGGCGgCGGuGGCg-GCGGG-GGgUG- -5'
31632 5' -69.7 NC_006879.1 + 5830 0.67 0.091859
Target:  5'- aCCCUGCgCuCCAUCGCCaaguugcuuuccaacGCCCUCUACg -3'
miRNA:   3'- gGGGGCG-GcGGUGGCGG---------------CGGGGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 5941 0.67 0.088485
Target:  5'- aUCCUGCCcgacgaGCgCACCGCCGUguUCCCCGa -3'
miRNA:   3'- gGGGGCGG------CG-GUGGCGGCG--GGGGGUg -5'
31632 5' -69.7 NC_006879.1 + 6089 0.68 0.083868
Target:  5'- cCCCCCGcCCGCCAacUUGCUagaUCCCCUGCc -3'
miRNA:   3'- -GGGGGC-GGCGGU--GGCGGc--GGGGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 7759 0.71 0.047192
Target:  5'- aCUCCCaCCGCCAaggcgaaggggaUGCCGCCCCaCCAa -3'
miRNA:   3'- -GGGGGcGGCGGUg-----------GCGGCGGGG-GGUg -5'
31632 5' -69.7 NC_006879.1 + 7808 0.66 0.109474
Target:  5'- gUCgUCGUCcCCACCGUCGUCCaCCCAg -3'
miRNA:   3'- -GGgGGCGGcGGUGGCGGCGGG-GGGUg -5'
31632 5' -69.7 NC_006879.1 + 7924 0.72 0.033201
Target:  5'- uUCCCGCCGaCCucagcGCgGCCGCCCUCgACu -3'
miRNA:   3'- gGGGGCGGC-GG-----UGgCGGCGGGGGgUG- -5'
31632 5' -69.7 NC_006879.1 + 8128 0.77 0.014862
Target:  5'- cCCCCCGgCGCagaGCCGCCucuaCCCCCCGg -3'
miRNA:   3'- -GGGGGCgGCGg--UGGCGGc---GGGGGGUg -5'
31632 5' -69.7 NC_006879.1 + 8223 0.66 0.118489
Target:  5'- aCCUCaaCCGCCG-CGUCGUCgCCCACg -3'
miRNA:   3'- -GGGGgcGGCGGUgGCGGCGGgGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 8359 0.67 0.093342
Target:  5'- uUCCUCGCggagGUCGCCGUgGCCCgCUCGCu -3'
miRNA:   3'- -GGGGGCGg---CGGUGGCGgCGGG-GGGUG- -5'
31632 5' -69.7 NC_006879.1 + 8442 0.68 0.07613
Target:  5'- aCCUgGCCGCCACCGUggagcgagcgggccaCGgcgaCCUCCGCg -3'
miRNA:   3'- gGGGgCGGCGGUGGCG---------------GCg---GGGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 8913 0.68 0.083868
Target:  5'- gUCCCCGUCGCagaGCUGCCggaggaacccguGCCCCUgGa -3'
miRNA:   3'- -GGGGGCGGCGg--UGGCGG------------CGGGGGgUg -5'
31632 5' -69.7 NC_006879.1 + 9333 0.71 0.043708
Target:  5'- cUCCUCGCCaCCAuCCGCCGCCUgaagaCCGCc -3'
miRNA:   3'- -GGGGGCGGcGGU-GGCGGCGGGg----GGUG- -5'
31632 5' -69.7 NC_006879.1 + 9426 0.69 0.062321
Target:  5'- uCCCCUGuCUGCCAUgcgagucgaGCCGaaCCCCCGCa -3'
miRNA:   3'- -GGGGGC-GGCGGUGg--------CGGCg-GGGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 9812 0.74 0.025186
Target:  5'- gCCCCCGCCacagucggcugGCCccuguACCGagaaCCGCCuCCCCACu -3'
miRNA:   3'- -GGGGGCGG-----------CGG-----UGGC----GGCGG-GGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 10071 0.68 0.077371
Target:  5'- -aUCCGCCGCUcCCGaugCGCCuggCCCCGCa -3'
miRNA:   3'- ggGGGCGGCGGuGGCg--GCGG---GGGGUG- -5'
31632 5' -69.7 NC_006879.1 + 10083 0.71 0.047192
Target:  5'- uUCCCCGCCGCCGCa-CCcuugcgacuuuaCCCCCCGa -3'
miRNA:   3'- -GGGGGCGGCGGUGgcGGc-----------GGGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.