miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31633 3' -64.7 NC_006879.1 + 9818 0.66 0.202333
Target:  5'- cCCGGCgCcCCCGCCaCAGUcGGCU--GGCc -3'
miRNA:   3'- -GGUCG-GcGGGCGG-GUCA-CCGGcaCCG- -5'
31633 3' -64.7 NC_006879.1 + 15034 0.67 0.17764
Target:  5'- uCCGG--GCCCGCCuCAGcacGGCCcUGGCu -3'
miRNA:   3'- -GGUCggCGGGCGG-GUCa--CCGGcACCG- -5'
31633 3' -64.7 NC_006879.1 + 9836 0.67 0.17764
Target:  5'- gCCAGgugaUGCCgGCCgaGGUGGUCGcGGCc -3'
miRNA:   3'- -GGUCg---GCGGgCGGg-UCACCGGCaCCG- -5'
31633 3' -64.7 NC_006879.1 + 4691 0.67 0.164141
Target:  5'- gUCAGUCGCUugaaaagaUGCCCA-UGGCCGacGGCc -3'
miRNA:   3'- -GGUCGGCGG--------GCGGGUcACCGGCa-CCG- -5'
31633 3' -64.7 NC_006879.1 + 9547 0.67 0.164141
Target:  5'- -aGGCCguGCUgGCCgAGagGGUCGUGGCc -3'
miRNA:   3'- ggUCGG--CGGgCGGgUCa-CCGGCACCG- -5'
31633 3' -64.7 NC_006879.1 + 14953 0.67 0.164141
Target:  5'- cCCAccGCCGCCaUGCugcagCCAG-GGCCGUgcugaGGCg -3'
miRNA:   3'- -GGU--CGGCGG-GCG-----GGUCaCCGGCA-----CCG- -5'
31633 3' -64.7 NC_006879.1 + 12691 0.68 0.155661
Target:  5'- cCCAGuCUGUcuuCCGCCagCAGUGGUCG-GGUa -3'
miRNA:   3'- -GGUC-GGCG---GGCGG--GUCACCGGCaCCG- -5'
31633 3' -64.7 NC_006879.1 + 4762 0.69 0.118951
Target:  5'- aCCAGCCGgUgggCGUCCAG-GGCCGcgagGGUu -3'
miRNA:   3'- -GGUCGGCgG---GCGGGUCaCCGGCa---CCG- -5'
31633 3' -64.7 NC_006879.1 + 7838 0.7 0.100966
Target:  5'- gCAGCUGCCCGCuguCCAGgGaGUCGagGGCg -3'
miRNA:   3'- gGUCGGCGGGCG---GGUCaC-CGGCa-CCG- -5'
31633 3' -64.7 NC_006879.1 + 23613 0.7 0.092965
Target:  5'- gCCAGCgGCgCGCCCuGUGGuCCGguuucaGCg -3'
miRNA:   3'- -GGUCGgCGgGCGGGuCACC-GGCac----CG- -5'
31633 3' -64.7 NC_006879.1 + 17273 1.11 0.000052
Target:  5'- gCCAGCCGCCCGCCCAGUGGCCGUGGCc -3'
miRNA:   3'- -GGUCGGCGGGCGGGUCACCGGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.